RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 PDE4DIPQ5VU43 2346 aa13.24□□□□□ -0.29
SPG11-212ENST00000558790 RFC4P35249 363 aa13.24□□□□□ -0.29
SPG11-212ENST00000558790 TRIM26Q12899 539 aaPredicted RBP13.24□□□□□ -0.29
SPG11-212ENST00000558790 CACNA1SQ13698 1873 aa13.24□□□□□ -0.29
SPG11-212ENST00000558790 RNF40O75150 1001 aa13.23□□□□□ -0.29
SPG11-212ENST00000558790 RPS6KA4O75676 772 aa13.23□□□□□ -0.29
SPG11-212ENST00000558790 CABP4P57796 275 aa13.23□□□□□ -0.29
SPG11-212ENST00000558790 TMEM132AQ24JP5 1023 aa13.23□□□□□ -0.29
SPG11-212ENST00000558790 PLEKHO1Q53GL0 409 aaPredicted RBP13.23□□□□□ -0.29
SPG11-212ENST00000558790 ABHD8Q96I13 439 aa13.23□□□□□ -0.29
SPG11-212ENST00000558790 PARP3Q9Y6F1 533 aa13.23□□□□□ -0.29
SPG11-212ENST00000558790 USP42Q9H9J4 1324 aaKnown RBP13.22□□□□□ -0.29
SPG11-212ENST00000558790 PTCD1O75127 700 aaKnown RBP13.22□□□□□ -0.29
SPG11-212ENST00000558790 CRKLP46109 303 aaKnown RBP13.22□□□□□ -0.29
SPG11-212ENST00000558790 BEGAINQ9BUH8 593 aa13.22□□□□□ -0.29
SPG11-212ENST00000558790 SRP68Q9UHB9 627 aaKnown RBP13.22□□□□□ -0.29
SPG11-212ENST00000558790 MKRN1Q9UHC7 482 aaKnown RBP13.22□□□□□ -0.29
SPG11-212ENST00000558790 TIMELESSQ9UNS1 1208 aa13.22□□□□□ -0.29
SPG11-212ENST00000558790 ANKRD31Q8N7Z5 1873 aa13.22□□□□□ -0.29
SPG11-212ENST00000558790 SIPA1L3O60292 1781 aaPredicted RBP13.22□□□□□ -0.29
SPG11-212ENST00000558790 SCN7AQ01118 1682 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 KDM2BQ8NHM5 1336 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 KCNA3P22001 575 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 MTHFSP49914 203 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 MLLT1Q03111 559 aaPredicted RBP13.21□□□□□ -0.29
SPG11-212ENST00000558790 DDR1Q08345 913 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 AMOTQ4VCS5 1084 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 C1orf141Q5JVX7 400 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 RDH13Q8NBN7 331 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 DDRGK1Q96HY6 314 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 PANK3Q9H999 370 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 PRDM10Q9NQV6 1147 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 RNF181Q9P0P0 153 aa13.21□□□□□ -0.29
SPG11-212ENST00000558790 COL11A2P13942 1736 aaPredicted RBP13.21□□□□□ -0.3
SPG11-212ENST00000558790 DICER1Q9UPY3 1922 aaKnown RBP13.21□□□□□ -0.3
SPG11-212ENST00000558790 GOLGA8CPA6NN73 597 aa13.2□□□□□ -0.3
SPG11-212ENST00000558790 CD46P15529 392 aa13.2□□□□□ -0.3
SPG11-212ENST00000558790 HSPA5P11021 654 aaKnown RBP13.19□□□□□ -0.3
SPG11-212ENST00000558790 SULT6B1Q6IMI4 303 aa13.19□□□□□ -0.3
SPG11-212ENST00000558790 SULF1Q8IWU6 871 aa13.19□□□□□ -0.3
SPG11-212ENST00000558790 NFATC2IPQ8NCF5 419 aa13.19□□□□□ -0.3
SPG11-212ENST00000558790 CLSPNQ9HAW4 1339 aa13.18□□□□□ -0.3
SPG11-212ENST00000558790 SLC10A3P09131 477 aa13.18□□□□□ -0.3
SPG11-212ENST00000558790 LBX1P52954 281 aa13.18□□□□□ -0.3
SPG11-212ENST00000558790 MORC1Q86VD1 984 aa13.18□□□□□ -0.3
SPG11-212ENST00000558790 FER1L6Q2WGJ9 1857 aa13.17□□□□□ -0.3
SPG11-212ENST00000558790 POLRMTO00411 1230 aaKnown RBP13.17□□□□□ -0.3
SPG11-212ENST00000558790 CHRNA5P30532 468 aa13.17□□□□□ -0.3
SPG11-212ENST00000558790 EIF4G2P78344 907 aaKnown RBP eCLIP13.17□□□□□ -0.3
SPG11-212ENST00000558790 INTS5Q6P9B9 1019 aaKnown RBP13.17□□□□□ -0.3
SPG11-212ENST00000558790 LRCH3Q96II8 777 aa13.17□□□□□ -0.3
SPG11-212ENST00000558790 PIM2Q9P1W9 311 aa13.17□□□□□ -0.3
SPG11-212ENST00000558790 BCORQ6W2J9 1755 aa13.17□□□□□ -0.3
SPG11-212ENST00000558790 ARFGEF2Q9Y6D5 1785 aa13.17□□□□□ -0.3
SPG11-212ENST00000558790 SOS1Q07889 1333 aaPredicted RBP13.16□□□□□ -0.3
SPG11-212ENST00000558790 IL13P35225 146 aa13.16□□□□□ -0.3
SPG11-212ENST00000558790 RGS19P49795 217 aa13.16□□□□□ -0.3
SPG11-212ENST00000558790 BCAMP50895 628 aa13.16□□□□□ -0.3
SPG11-212ENST00000558790 DALRD3Q5D0E6 543 aaKnown RBP13.16□□□□□ -0.3
SPG11-212ENST00000558790 ANKK1Q8NFD2 765 aa13.16□□□□□ -0.3
SPG11-212ENST00000558790 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.16□□□□□ -0.3
SPG11-212ENST00000558790 COL15A1P39059 1388 aa13.16□□□□□ -0.3
SPG11-212ENST00000558790 CTCFP49711 727 aaPredicted RBP13.15□□□□□ -0.3
SPG11-212ENST00000558790 RASSF7Q02833 373 aa13.15□□□□□ -0.3
SPG11-212ENST00000558790 SLF2Q8IX21 1173 aa13.15□□□□□ -0.3
SPG11-212ENST00000558790 DNAJC10Q8IXB1 793 aa13.15□□□□□ -0.3
SPG11-212ENST00000558790 WNT2BQ93097 391 aa13.15□□□□□ -0.3
SPG11-212ENST00000558790 CCDC85CA6NKD9 419 aa13.14□□□□□ -0.31
SPG11-212ENST00000558790 POTECB2RU33 542 aa13.14□□□□□ -0.31
SPG11-212ENST00000558790 AKAP4Q5JQC9 854 aa13.14□□□□□ -0.31
SPG11-212ENST00000558790 USPL1Q5W0Q7 1092 aa13.14□□□□□ -0.31
SPG11-212ENST00000558790 SLC52A2Q9HAB3 445 aa13.14□□□□□ -0.31
SPG11-212ENST00000558790 CARMIL3Q8ND23 1372 aa13.13□□□□□ -0.31
SPG11-212ENST00000558790 TM4SF1P30408 202 aa13.13□□□□□ -0.31
SPG11-212ENST00000558790 PCGF6Q9BYE7 350 aa13.13□□□□□ -0.31
SPG11-212ENST00000558790 COL3A1P02461 1466 aaPredicted RBP13.12□□□□□ -0.31
SPG11-212ENST00000558790 CNTNAP1P78357 1384 aa13.12□□□□□ -0.31
SPG11-212ENST00000558790 ZPR1O75312 459 aa13.12□□□□□ -0.31
SPG11-212ENST00000558790 CYP19A1P11511 503 aaPredicted RBP13.12□□□□□ -0.31
SPG11-212ENST00000558790 SLC4A3P48751 1232 aa13.12□□□□□ -0.31
SPG11-212ENST00000558790 SLC39A6Q13433 755 aa13.12□□□□□ -0.31
SPG11-212ENST00000558790 LGR6Q9HBX8 967 aa13.12□□□□□ -0.31
SPG11-212ENST00000558790 ZBTB1Q9Y2K1 713 aa13.12□□□□□ -0.31
SPG11-212ENST00000558790 HMOX1P09601 288 aa13.11□□□□□ -0.31
SPG11-212ENST00000558790 HSPA8P11142 646 aaKnown RBP13.11□□□□□ -0.31
SPG11-212ENST00000558790 VEGFAP15692 232 aaPredicted RBP13.11□□□□□ -0.31
SPG11-212ENST00000558790 NFIXQ14938 502 aa13.11□□□□□ -0.31
SPG11-212ENST00000558790 KCTD12Q96CX2 325 aaKnown RBP13.11□□□□□ -0.31
SPG11-212ENST00000558790 KNSTRNQ9Y448 316 aa13.11□□□□□ -0.31
SPG11-212ENST00000558790 SOWAHBA6NEL2 793 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 RNMTO43148 476 aaKnown RBP13.1□□□□□ -0.31
SPG11-212ENST00000558790 CFHP08603 1231 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 VEGFBP49765 207 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 TBC1D2Q9BYX2 928 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 WBP1LQ9NX94 342 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 NARFQ9UHQ1 456 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 HPS5Q9UPZ3 1129 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 SLX4Q8IY92 1834 aa13.1□□□□□ -0.31
SPG11-212ENST00000558790 ZC3H4Q9UPT8 1303 aaKnown RBP13.1□□□□□ -0.31
SPG11-212ENST00000558790 GCGRP47871 477 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms