RNA–Protein interactions for RNA: ENST00000558771.1

LRRC28-208, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-208ENST00000558771 SMARCC1Q92922 1105 aaPredicted RBP7.67□□□□□ -1.18
LRRC28-208ENST00000558771 PUS7Q96PZ0 661 aaKnown RBP7.67□□□□□ -1.18
LRRC28-208ENST00000558771 NMRK2Q9NPI5 230 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 FCF1Q9Y324 198 aaKnown RBP7.67□□□□□ -1.18
LRRC28-208ENST00000558771 PXDNLA1KZ92 1463 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 N4BP2Q86UW6 1770 aaPredicted RBP7.66□□□□□ -1.18
LRRC28-208ENST00000558771 MAP2P11137 1827 aaKnown RBP7.66□□□□□ -1.18
LRRC28-208ENST00000558771 KIF13BQ9NQT8 1826 aa7.66□□□□□ -1.18
LRRC28-208ENST00000558771 PIGBQ92521 554 aa7.66□□□□□ -1.18
LRRC28-208ENST00000558771 KLRG1Q96E93 195 aa7.66□□□□□ -1.18
LRRC28-208ENST00000558771 BCS1LQ9Y276 419 aa7.66□□□□□ -1.18
LRRC28-208ENST00000558771 PCDHB15Q9Y5E8 787 aa7.66□□□□□ -1.18
LRRC28-208ENST00000558771 SMG6Q86US8 1419 aaKnown RBP7.66□□□□□ -1.18
LRRC28-208ENST00000558771 LOC102724428A0A0B4J2F2 783 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 DXOO77932 396 aaKnown RBP7.65□□□□□ -1.18
LRRC28-208ENST00000558771 MMP10P09238 476 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 SIK1P57059 783 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 HSP90AB2PQ58FF8 381 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 MYSM1Q5VVJ2 828 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 SPRYD7Q5W111 196 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 ARHGAP27Q6ZUM4 889 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 JMYQ8N9B5 988 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 IRX2Q9BZI1 471 aaPredicted RBP7.65□□□□□ -1.18
LRRC28-208ENST00000558771 GGNBP2Q9H3C7 697 aa7.65□□□□□ -1.18
LRRC28-208ENST00000558771 PKD1L3Q7Z443 1732 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 INSRP06213 1382 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 A0A0G2JLW4 131 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 TGFB2P61812 414 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 ITPK1Q13572 414 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 MTMR2Q13614 643 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 FAM117AQ9C073 453 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 RSPH6AQ9H0K4 717 aa7.64□□□□□ -1.19
LRRC28-208ENST00000558771 C10orf71Q711Q0 1435 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 FLT4P35916 1363 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 SPDYE5A6NIY4 337 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 FYB1O15117 783 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 DPEP1P16444 411 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 JUNDP17535 347 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 C9orf131Q5VYM1 1079 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 ZNF598Q86UK7 904 aaKnown RBP7.63□□□□□ -1.19
LRRC28-208ENST00000558771 C16orf71Q8IYS4 520 aaPredicted RBP7.63□□□□□ -1.19
LRRC28-208ENST00000558771 TNS4Q8IZW8 715 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 DDRGK1Q96HY6 314 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 TESK2Q96S53 571 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 LIMD1Q9UGP4 676 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 ASAP1Q9ULH1 1129 aa7.63□□□□□ -1.19
LRRC28-208ENST00000558771 BRCA1P38398 1863 aaKnown RBP7.63□□□□□ -1.19
LRRC28-208ENST00000558771 KCPQ6ZWJ8 1503 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 RPIAP49247 311 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 PRELPP51888 382 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 FSTL1Q12841 308 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 CSPP1Q1MSJ5 1256 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 PRR7Q8TB68 274 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 POLR3EQ9NVU0 708 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 TMOD3Q9NYL9 352 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 ARFGEF1Q9Y6D6 1849 aa7.62□□□□□ -1.19
LRRC28-208ENST00000558771 NCAPD2Q15021 1401 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 C4AP0C0L4 1744 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 KIF24Q5T7B8 1368 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 PLEKHG2Q9H7P9 1386 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 ST20-MTHFSA0A0A6YYL1 179 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 ZBTB24O43167 697 aaPredicted RBP7.61□□□□□ -1.19
LRRC28-208ENST00000558771 GFRA3O60609 400 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 KCNA3P22001 575 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 TMF1P82094 1093 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 NEUROD2Q15784 382 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 TUSC1Q2TAM9 212 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 TRAPPC3LQ5T215 181 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 PRPF38BQ5VTL8 546 aaKnown RBP7.61□□□□□ -1.19
LRRC28-208ENST00000558771 NLGN1Q8N2Q7 840 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 CCDC24Q8N4L8 307 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 ZBTB3Q9H5J0 574 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 RRAGCQ9HB90 399 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 ATG3Q9NT62 314 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 CCDC87Q9NVE4 849 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 SPG7Q9UQ90 795 aa7.61□□□□□ -1.19
LRRC28-208ENST00000558771 RTCBQ9Y3I0 505 aaKnown RBP7.61□□□□□ -1.19
LRRC28-208ENST00000558771 KIF20BQ96Q89 1820 aa7.6□□□□□ -1.19
LRRC28-208ENST00000558771 CD2BP2O95400 341 aaKnown RBP7.6□□□□□ -1.19
LRRC28-208ENST00000558771 GYS1P13807 737 aa7.6□□□□□ -1.19
LRRC28-208ENST00000558771 CLK2P49760 499 aaKnown RBP7.6□□□□□ -1.19
LRRC28-208ENST00000558771 ZNF697Q5TEC3 545 aa7.6□□□□□ -1.19
LRRC28-208ENST00000558771 SLC4A9Q96Q91 983 aa7.6□□□□□ -1.19
LRRC28-208ENST00000558771 RNF181Q9P0P0 153 aa7.6□□□□□ -1.19
LRRC28-208ENST00000558771 EMILIN1Q9Y6C2 1016 aa7.6□□□□□ -1.19
LRRC28-208ENST00000558771 KDRP35968 1356 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 KDM2BQ8NHM5 1336 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 PHKG2P15735 406 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 SKIV2LQ15477 1246 aaKnown RBP7.59□□□□□ -1.19
LRRC28-208ENST00000558771 DESI1Q6ICB0 168 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 IFNL2Q8IZJ0 200 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 DCAF5Q96JK2 942 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 PIM2Q9P1W9 311 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 PARP3Q9Y6F1 533 aa7.59□□□□□ -1.19
LRRC28-208ENST00000558771 TNRC6CQ9HCJ0 1690 aaKnown RBP7.59□□□□□ -1.19
LRRC28-208ENST00000558771 TONSLQ96HA7 1378 aa7.59□□□□□ -1.2
LRRC28-208ENST00000558771 COL5A3P25940 1745 aaPredicted RBP7.58□□□□□ -1.2
LRRC28-208ENST00000558771 SBF1O95248 1867 aa7.58□□□□□ -1.2
LRRC28-208ENST00000558771 LILRB3O75022 631 aa7.58□□□□□ -1.2
LRRC28-208ENST00000558771 HSPA1AP0DMV8 641 aaKnown RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms