RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 AAMPQ13685 434 aa12.04□□□□□ -0.48
CUX1-216ENST00000558469 PRR5LQ6MZQ0 368 aa12.04□□□□□ -0.48
CUX1-216ENST00000558469 KAZALD1Q96I82 304 aa12.04□□□□□ -0.48
CUX1-216ENST00000558469 KIF13BQ9NQT8 1826 aa12.04□□□□□ -0.48
CUX1-216ENST00000558469 CACNA1SQ13698 1873 aa12.04□□□□□ -0.48
CUX1-216ENST00000558469 PDE8AO60658 829 aa12.03□□□□□ -0.48
CUX1-216ENST00000558469 HSP90B1P14625 803 aaKnown RBP12.03□□□□□ -0.48
CUX1-216ENST00000558469 POLD1P28340 1107 aa12.03□□□□□ -0.48
CUX1-216ENST00000558469 FOXO4P98177 505 aa12.03□□□□□ -0.48
CUX1-216ENST00000558469 EPHA10Q5JZY3 1008 aa12.03□□□□□ -0.48
CUX1-216ENST00000558469 SLC10A5Q5PT55 438 aa12.03□□□□□ -0.48
CUX1-216ENST00000558469 BICC1Q9H694 974 aaKnown RBP12.03□□□□□ -0.48
CUX1-216ENST00000558469 ABCC12Q96J65 1359 aa12.03□□□□□ -0.48
CUX1-216ENST00000558469 PLA2G12BQ9BX93 195 aa12.02□□□□□ -0.49
CUX1-216ENST00000558469 CTSWP56202 376 aa12.01□□□□□ -0.49
CUX1-216ENST00000558469 LMBR1LQ6UX01 489 aa12.01□□□□□ -0.49
CUX1-216ENST00000558469 CHRDL2Q6WN34 429 aa12.01□□□□□ -0.49
CUX1-216ENST00000558469 ANKRD44Q8N8A2 993 aa12.01□□□□□ -0.49
CUX1-216ENST00000558469 NLRP3Q96P20 1036 aa12.01□□□□□ -0.49
CUX1-216ENST00000558469 CCDC85AQ96PX6 553 aaPredicted RBP12.01□□□□□ -0.49
CUX1-216ENST00000558469 CHMP3Q9Y3E7 222 aa12.01□□□□□ -0.49
CUX1-216ENST00000558469 PCDHB15Q9Y5E8 787 aa12.01□□□□□ -0.49
CUX1-216ENST00000558469 COL11A2P13942 1736 aaPredicted RBP12□□□□□ -0.49
CUX1-216ENST00000558469 PTGER2P43116 358 aa12□□□□□ -0.49
CUX1-216ENST00000558469 ATP8B2P98198 1209 aa12□□□□□ -0.49
CUX1-216ENST00000558469 ERICH6BQ5W0A0 696 aa12□□□□□ -0.49
CUX1-216ENST00000558469 CEP85Q6P2H3 762 aa12□□□□□ -0.49
CUX1-216ENST00000558469 POTEHQ6S545 545 aa12□□□□□ -0.49
CUX1-216ENST00000558469 C3orf67Q6ZVT6 689 aa12□□□□□ -0.49
CUX1-216ENST00000558469 RPAP2Q8IXW5 612 aaPredicted RBP12□□□□□ -0.49
CUX1-216ENST00000558469 TTLL11Q8NHH1 800 aa12□□□□□ -0.49
CUX1-216ENST00000558469 SPON1Q9HCB6 807 aa12□□□□□ -0.49
CUX1-216ENST00000558469 DLEC1Q9Y238 1755 aa12□□□□□ -0.49
CUX1-216ENST00000558469 PNMA6EA0A0J9YXQ4 647 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 SRGAP3O43295 1099 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 CSF1RP07333 972 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 RABL6Q3YEC7 729 aaPredicted RBP11.99□□□□□ -0.49
CUX1-216ENST00000558469 CCDC152Q4G0S7 254 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 SIRT2Q8IXJ6 389 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 SGIP1Q9BQI5 828 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 BRIP1Q9BX63 1249 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 GTF3C3Q9Y5Q9 886 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 RIC1Q4ADV7 1423 aa11.99□□□□□ -0.49
CUX1-216ENST00000558469 PDE6BP35913 854 aa11.98□□□□□ -0.49
CUX1-216ENST00000558469 MTX1Q13505 466 aa11.98□□□□□ -0.49
CUX1-216ENST00000558469 SF3B3Q15393 1217 aaKnown RBP11.98□□□□□ -0.49
CUX1-216ENST00000558469 FAM161AQ3B820 660 aa11.98□□□□□ -0.49
CUX1-216ENST00000558469 GREM2Q9H772 168 aa11.98□□□□□ -0.49
CUX1-216ENST00000558469 KIAA1551Q9HCM1 1747 aa11.97□□□□□ -0.49
CUX1-216ENST00000558469 C10orf71Q711Q0 1435 aa11.97□□□□□ -0.49
CUX1-216ENST00000558469 HMMRO75330 724 aa11.97□□□□□ -0.49
CUX1-216ENST00000558469 ITGA6P23229 1130 aa11.97□□□□□ -0.49
CUX1-216ENST00000558469 IFIT5Q13325 482 aaKnown RBP11.97□□□□□ -0.49
CUX1-216ENST00000558469 CCDC57Q2TAC2 916 aa11.97□□□□□ -0.49
CUX1-216ENST00000558469 RPGRQ92834 1020 aaKnown RBP11.97□□□□□ -0.49
CUX1-216ENST00000558469 PPP4R2Q9NY27 417 aa11.97□□□□□ -0.49
CUX1-216ENST00000558469 SSUH2Q9Y2M2 353 aa11.97□□□□□ -0.49
CUX1-216ENST00000558469 ANKRD18BA2A2Z9 1011 aa11.96□□□□□ -0.49
CUX1-216ENST00000558469 KLRG2A4D1S0 409 aaPredicted RBP11.96□□□□□ -0.49
CUX1-216ENST00000558469 DDX46Q7L014 1031 aaKnown RBP11.96□□□□□ -0.49
CUX1-216ENST00000558469 KLHL34Q8N239 644 aa11.96□□□□□ -0.49
CUX1-216ENST00000558469 KLHDC4Q8TBB5 520 aa11.96□□□□□ -0.49
CUX1-216ENST00000558469 SSH3Q8TE77 659 aa11.96□□□□□ -0.49
CUX1-216ENST00000558469 ZNF594Q96JF6 807 aaPredicted RBP11.96□□□□□ -0.49
CUX1-216ENST00000558469 CCDC136Q96JN2 1154 aa11.96□□□□□ -0.49
CUX1-216ENST00000558469 RWDD1Q9H446 243 aaPredicted RBP11.96□□□□□ -0.49
CUX1-216ENST00000558469 SEC31BQ9NQW1 1179 aa11.96□□□□□ -0.49
CUX1-216ENST00000558469 PPP1R1BQ9UD71 204 aaPredicted RBP11.96□□□□□ -0.49
CUX1-216ENST00000558469 COL4A1P02462 1669 aa11.96□□□□□ -0.5
CUX1-216ENST00000558469 BRCA1P38398 1863 aaKnown RBP11.95□□□□□ -0.5
CUX1-216ENST00000558469 A0A1B0GUL6 1792 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 RTL9Q8NET4 1388 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 H0YIN7 160 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 IGHDP01880 384 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 RFX5P48382 616 aaPredicted RBP11.95□□□□□ -0.5
CUX1-216ENST00000558469 CRY2Q49AN0 593 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 TAF7LQ5H9L4 462 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 C2CD5Q86YS7 1000 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 RBM17Q96I25 401 aaKnown RBP11.95□□□□□ -0.5
CUX1-216ENST00000558469 PA2G4Q9UQ80 394 aaKnown RBP11.95□□□□□ -0.5
CUX1-216ENST00000558469 SLX4Q8IY92 1834 aa11.95□□□□□ -0.5
CUX1-216ENST00000558469 SRGNP10124 158 aa11.94□□□□□ -0.5
CUX1-216ENST00000558469 NPR1P16066 1061 aa11.94□□□□□ -0.5
CUX1-216ENST00000558469 CHRNA5P30532 468 aa11.94□□□□□ -0.5
CUX1-216ENST00000558469 PTPN12Q05209 780 aaKnown RBP11.94□□□□□ -0.5
CUX1-216ENST00000558469 HDAC1Q13547 482 aaPredicted RBP11.94□□□□□ -0.5
CUX1-216ENST00000558469 ZNF622Q969S3 477 aaKnown RBP eCLIP11.94□□□□□ -0.53e-8■■□□□ 11.8
CUX1-216ENST00000558469 MASTLQ96GX5 879 aa11.94□□□□□ -0.5
CUX1-216ENST00000558469 SIL1Q9H173 461 aa11.94□□□□□ -0.5
CUX1-216ENST00000558469 A0A0G2JLW4 131 aa11.93□□□□□ -0.5
CUX1-216ENST00000558469 SURF6O75683 361 aaKnown RBP11.93□□□□□ -0.5
CUX1-216ENST00000558469 HOXA10P31260 410 aaPredicted RBP11.93□□□□□ -0.5
CUX1-216ENST00000558469 B4GALNT3Q6L9W6 998 aa11.93□□□□□ -0.5
CUX1-216ENST00000558469 ANKRD18AQ8IVF6 992 aa11.93□□□□□ -0.5
CUX1-216ENST00000558469 CELF1Q92879 486 aaKnown RBP11.93□□□□□ -0.5
CUX1-216ENST00000558469 CDC5LQ99459 802 aaKnown RBP11.93□□□□□ -0.5
CUX1-216ENST00000558469 COPRSQ9NQ92 184 aa11.93□□□□□ -0.5
CUX1-216ENST00000558469 PDZRN3Q9UPQ7 1066 aa11.93□□□□□ -0.5
CUX1-216ENST00000558469 CD2APQ9Y5K6 639 aa11.93□□□□□ -0.5
CUX1-216ENST00000558469 PITPNM1O00562 1244 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms