RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 CNBD1Q8NA66 436 aa15.42■□□□□ 0.06
TPM1-209ENST00000558072 NLRP3Q96P20 1036 aa15.42■□□□□ 0.06
TPM1-209ENST00000558072 CCDC85AQ96PX6 553 aaPredicted RBP15.42■□□□□ 0.06
TPM1-209ENST00000558072 FBXO3Q9UK99 471 aa15.42■□□□□ 0.06
TPM1-209ENST00000558072 PDZRN3Q9UPQ7 1066 aa15.42■□□□□ 0.06
TPM1-209ENST00000558072 SPEF2Q9C093 1822 aa15.42■□□□□ 0.06
TPM1-209ENST00000558072 TAF1P21675 1872 aa15.42■□□□□ 0.06
TPM1-209ENST00000558072 SRGAP3O43295 1099 aa15.41■□□□□ 0.06
TPM1-209ENST00000558072 CCDC57Q2TAC2 916 aa15.41■□□□□ 0.06
TPM1-209ENST00000558072 CCDC152Q4G0S7 254 aa15.41■□□□□ 0.06
TPM1-209ENST00000558072 SSH3Q8TE77 659 aa15.41■□□□□ 0.06
TPM1-209ENST00000558072 BICC1Q9H694 974 aaKnown RBP15.41■□□□□ 0.06
TPM1-209ENST00000558072 WWC3Q9ULE0 1092 aa15.41■□□□□ 0.06
TPM1-209ENST00000558072 CACNA1SQ13698 1873 aa15.41■□□□□ 0.06
TPM1-209ENST00000558072 C10orf71Q711Q0 1435 aa15.41■□□□□ 0.06
TPM1-209ENST00000558072 RAB11FIP3O75154 756 aa15.4■□□□□ 0.06
TPM1-209ENST00000558072 CSF1RP07333 972 aa15.4■□□□□ 0.06
TPM1-209ENST00000558072 ERC1Q8IUD2 1116 aa15.4■□□□□ 0.06
TPM1-209ENST00000558072 KAZALD1Q96I82 304 aa15.4■□□□□ 0.06
TPM1-209ENST00000558072 RIC1Q4ADV7 1423 aa15.4■□□□□ 0.06
TPM1-209ENST00000558072 MYH3P11055 1940 aa15.39■□□□□ 0.05
TPM1-209ENST00000558072 KIF13BQ9NQT8 1826 aa15.39■□□□□ 0.05
TPM1-209ENST00000558072 CTSWP56202 376 aa15.39■□□□□ 0.05
TPM1-209ENST00000558072 IFIT5Q13325 482 aaKnown RBP15.39■□□□□ 0.05
TPM1-209ENST00000558072 POLA2Q14181 598 aa15.39■□□□□ 0.05
TPM1-209ENST00000558072 B4GALNT3Q6L9W6 998 aa15.39■□□□□ 0.05
TPM1-209ENST00000558072 LMBR1LQ6UX01 489 aa15.39■□□□□ 0.05
TPM1-209ENST00000558072 DCTPP1Q9H773 170 aa15.39■□□□□ 0.05
TPM1-209ENST00000558072 FOXO4P98177 505 aa15.38■□□□□ 0.05
TPM1-209ENST00000558072 SF3B3Q15393 1217 aaKnown RBP15.38■□□□□ 0.05
TPM1-209ENST00000558072 TAF7LQ5H9L4 462 aa15.38■□□□□ 0.05
TPM1-209ENST00000558072 SPON1Q9HCB6 807 aa15.38■□□□□ 0.05
TPM1-209ENST00000558072 PPP1R1BQ9UD71 204 aaPredicted RBP15.38■□□□□ 0.05
TPM1-209ENST00000558072 CHMP3Q9Y3E7 222 aa15.38■□□□□ 0.05
TPM1-209ENST00000558072 RTL9Q8NET4 1388 aa15.37■□□□□ 0.05
TPM1-209ENST00000558072 ANKRD18BA2A2Z9 1011 aa15.37■□□□□ 0.05
TPM1-209ENST00000558072 POLD1P28340 1107 aa15.37■□□□□ 0.05
TPM1-209ENST00000558072 CHRNA5P30532 468 aa15.37■□□□□ 0.05
TPM1-209ENST00000558072 G3BP1Q13283 466 aaKnown RBP eCLIP15.37■□□□□ 0.05
TPM1-209ENST00000558072 SMC5Q8IY18 1101 aa15.37■□□□□ 0.05
TPM1-209ENST00000558072 CDC5LQ99459 802 aaKnown RBP15.37■□□□□ 0.05
TPM1-209ENST00000558072 LRP5O75197 1615 aa15.36■□□□□ 0.05
TPM1-209ENST00000558072 PDE6BP35913 854 aa15.36■□□□□ 0.05
TPM1-209ENST00000558072 SIRT2Q8IXJ6 389 aa15.36■□□□□ 0.05
TPM1-209ENST00000558072 TTLL11Q8NHH1 800 aa15.36■□□□□ 0.05
TPM1-209ENST00000558072 BRIP1Q9BX63 1249 aa15.36■□□□□ 0.05
TPM1-209ENST00000558072 COPRSQ9NQ92 184 aa15.36■□□□□ 0.05
TPM1-209ENST00000558072 NOP58Q9Y2X3 529 aaKnown RBP15.36■□□□□ 0.05
TPM1-209ENST00000558072 DLEC1Q9Y238 1755 aa15.36■□□□□ 0.05
TPM1-209ENST00000558072 PNMA6EA0A0J9YXQ4 647 aa15.35■□□□□ 0.05
TPM1-209ENST00000558072 SURF6O75683 361 aaKnown RBP15.35■□□□□ 0.05
TPM1-209ENST00000558072 OS9Q13438 667 aaPredicted RBP15.35■□□□□ 0.05
TPM1-209ENST00000558072 PELP1Q8IZL8 1130 aaKnown RBP15.35■□□□□ 0.05
TPM1-209ENST00000558072 NLGN2Q8NFZ4 835 aa15.35■□□□□ 0.05
TPM1-209ENST00000558072 KDM2BQ8NHM5 1336 aa15.35■□□□□ 0.05
TPM1-209ENST00000558072 CIAO1O76071 339 aa15.34■□□□□ 0.05
TPM1-209ENST00000558072 IGHDP01880 384 aa15.34■□□□□ 0.05
TPM1-209ENST00000558072 IGHMBP2P38935 993 aaKnown RBP15.34■□□□□ 0.05
TPM1-209ENST00000558072 FAM161AQ3B820 660 aa15.34■□□□□ 0.05
TPM1-209ENST00000558072 DDX46Q7L014 1031 aaKnown RBP15.34■□□□□ 0.05
TPM1-209ENST00000558072 KIF1BPQ96EK5 621 aa15.34■□□□□ 0.05
TPM1-209ENST00000558072 SEC31BQ9NQW1 1179 aa15.34■□□□□ 0.05
TPM1-209ENST00000558072 ITGA6P23229 1130 aa15.33■□□□□ 0.04
TPM1-209ENST00000558072 IL15P40933 162 aaPredicted RBP15.33■□□□□ 0.04
TPM1-209ENST00000558072 TMC4Q7Z404 712 aa15.33■□□□□ 0.04
TPM1-209ENST00000558072 KLHDC4Q8TBB5 520 aa15.33■□□□□ 0.04
TPM1-209ENST00000558072 RPGRQ92834 1020 aaKnown RBP15.33■□□□□ 0.04
TPM1-209ENST00000558072 RBM17Q96I25 401 aaKnown RBP15.33■□□□□ 0.04
TPM1-209ENST00000558072 MPHOSPH8Q99549 860 aa15.33■□□□□ 0.04
TPM1-209ENST00000558072 GREM2Q9H772 168 aa15.33■□□□□ 0.04
TPM1-209ENST00000558072 A0A0G2JLW4 131 aa15.32■□□□□ 0.04
TPM1-209ENST00000558072 C2CD5Q86YS7 1000 aa15.32■□□□□ 0.04
TPM1-209ENST00000558072 ZNF594Q96JF6 807 aaPredicted RBP15.32■□□□□ 0.04
TPM1-209ENST00000558072 LRRCC1Q9C099 1032 aa15.32■□□□□ 0.04
TPM1-209ENST00000558072 FHDC1Q9C0D6 1143 aaPredicted RBP15.32■□□□□ 0.04
TPM1-209ENST00000558072 KLRG2A4D1S0 409 aaPredicted RBP15.31■□□□□ 0.04
TPM1-209ENST00000558072 DPEP1P16444 411 aa15.31■□□□□ 0.04
TPM1-209ENST00000558072 PTPN12Q05209 780 aaKnown RBP15.31■□□□□ 0.04
TPM1-209ENST00000558072 ANKRD18AQ8IVF6 992 aa15.31■□□□□ 0.04
TPM1-209ENST00000558072 TMX4Q9H1E5 349 aaPredicted RBP15.31■□□□□ 0.04
TPM1-209ENST00000558072 BRCA1P38398 1863 aaKnown RBP15.31■□□□□ 0.04
TPM1-209ENST00000558072 A0A1B0GUL6 1792 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 EYA2O00167 538 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 ALDH1B1P30837 517 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 RFX5P48382 616 aaPredicted RBP15.3■□□□□ 0.04
TPM1-209ENST00000558072 NUCB1Q02818 461 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 CRY2Q49AN0 593 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 ANKRD45Q5TZF3 282 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 LDHAL6AQ6ZMR3 332 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 CLASRPQ8N2M8 674 aaKnown RBP15.3■□□□□ 0.04
TPM1-209ENST00000558072 ZNF219Q9P2Y4 722 aaPredicted RBP15.3■□□□□ 0.04
TPM1-209ENST00000558072 PA2G4Q9UQ80 394 aaKnown RBP15.3■□□□□ 0.04
TPM1-209ENST00000558072 AKAP2Q9Y2D5 859 aa15.3■□□□□ 0.04
TPM1-209ENST00000558072 SLX4Q8IY92 1834 aa15.29■□□□□ 0.04
TPM1-209ENST00000558072 MROH5Q6ZUA9 1318 aa15.29■□□□□ 0.04
TPM1-209ENST00000558072 H0YIN7 160 aa15.29■□□□□ 0.04
TPM1-209ENST00000558072 BBOX1O75936 387 aa15.29■□□□□ 0.04
TPM1-209ENST00000558072 NPR1P16066 1061 aa15.29■□□□□ 0.04
TPM1-209ENST00000558072 HOXA10P31260 410 aaPredicted RBP15.29■□□□□ 0.04
TPM1-209ENST00000558072 OLFM4Q6UX06 510 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms