RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MEGF6O75095 1541 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 A0A0G2JLW4 131 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 MED23Q9ULK4 1368 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 SLIT3O75094 1523 aa15.35■□□□□ 0.05
LDLR-207ENST00000558013 TATP17735 454 aaPredicted RBP15.35■□□□□ 0.05
LDLR-207ENST00000558013 HDAC5Q9UQL6 1122 aa15.35■□□□□ 0.05
LDLR-207ENST00000558013 FOSBP53539 338 aa15.35■□□□□ 0.05
LDLR-207ENST00000558013 CKAP2LQ8IYA6 745 aa15.35■□□□□ 0.05
LDLR-207ENST00000558013 FAM13BQ9NYF5 915 aa15.35■□□□□ 0.05
LDLR-207ENST00000558013 TTC5Q8N0Z6 440 aa15.34■□□□□ 0.05
LDLR-207ENST00000558013 UQCRHLA0A096LP55 91 aa15.34■□□□□ 0.05
LDLR-207ENST00000558013 RRP9O43818 475 aaKnown RBP15.34■□□□□ 0.05
LDLR-207ENST00000558013 UQCRHP07919 91 aa15.34■□□□□ 0.05
LDLR-207ENST00000558013 LMBR1LQ6UX01 489 aa15.34■□□□□ 0.05
LDLR-207ENST00000558013 ARID3AQ99856 593 aa15.34■□□□□ 0.05
LDLR-207ENST00000558013 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.34■□□□□ 0.05
LDLR-207ENST00000558013 PSMA5P28066 241 aa15.34■□□□□ 0.05
LDLR-207ENST00000558013 TSC1Q92574 1164 aa15.34■□□□□ 0.05
LDLR-207ENST00000558013 C5P01031 1676 aa15.33■□□□□ 0.05
LDLR-207ENST00000558013 HIP1O00291 1037 aa15.33■□□□□ 0.05
LDLR-207ENST00000558013 KDM4AO75164 1064 aa15.33■□□□□ 0.05
LDLR-207ENST00000558013 SNRPA1P09661 255 aaKnown RBP15.33■□□□□ 0.05
LDLR-207ENST00000558013 TIMM10P62072 90 aa15.33■□□□□ 0.05
LDLR-207ENST00000558013 SPC24Q8NBT2 197 aa15.33■□□□□ 0.05
LDLR-207ENST00000558013 COPRSQ9NQ92 184 aa15.33■□□□□ 0.05
LDLR-207ENST00000558013 SNRKQ9NRH2 765 aa15.33■□□□□ 0.05
LDLR-207ENST00000558013 CYP21A2P08686 494 aa15.33■□□□□ 0.04
LDLR-207ENST00000558013 IFNL2Q8IZJ0 200 aa15.33■□□□□ 0.04
LDLR-207ENST00000558013 FAM184AQ8NB25 1140 aa15.33■□□□□ 0.04
LDLR-207ENST00000558013 PHRF1Q9P1Y6 1649 aaKnown RBP15.33■□□□□ 0.04
LDLR-207ENST00000558013 C1orf167Q5SNV9 1468 aa15.33■□□□□ 0.04
LDLR-207ENST00000558013 OVOS2A0A0G2JMS6 1433 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 ZNF609O15014 1411 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 RNF20Q5VTR2 975 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 NEUROD6Q96NK8 337 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 ATP5JP18859 108 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 TTLL7Q6ZT98 887 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 NBPF26B4DH59 902 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 CEBPZQ03701 1054 aaKnown RBP15.32■□□□□ 0.04
LDLR-207ENST00000558013 NBPF14Q5TI25 921 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 NBPF10Q6P3W6 841 aaKnown RBP15.32■□□□□ 0.04
LDLR-207ENST00000558013 Q6ZUG5 572 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 NBPF15Q8N660 670 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 ZNF594Q96JF6 807 aaPredicted RBP15.32■□□□□ 0.04
LDLR-207ENST00000558013 DACT1Q9NYF0 836 aa15.32■□□□□ 0.04
LDLR-207ENST00000558013 MCM5P33992 734 aa15.31■□□□□ 0.04
LDLR-207ENST00000558013 KRT85P78386 507 aa15.31■□□□□ 0.04
LDLR-207ENST00000558013 KIAA2012Q0VF49 1180 aa15.31■□□□□ 0.04
LDLR-207ENST00000558013 STOX1Q6ZVD7 989 aa15.31■□□□□ 0.04
LDLR-207ENST00000558013 C19orf44Q9H6X5 657 aa15.31■□□□□ 0.04
LDLR-207ENST00000558013 SIPA1L3O60292 1781 aaPredicted RBP15.31■□□□□ 0.04
LDLR-207ENST00000558013 UVSSAQ2YD98 709 aa15.31■□□□□ 0.04
LDLR-207ENST00000558013 LUZP1Q86V48 1076 aa15.31■□□□□ 0.04
LDLR-207ENST00000558013 CABP4P57796 275 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 DNTTIP2Q5QJE6 756 aaKnown RBP15.3■□□□□ 0.04
LDLR-207ENST00000558013 BRF1Q92994 677 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 NEK1Q96PY6 1258 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 FAM177BA6PVY3 158 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 GOLIM4O00461 696 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 CHST3Q7LGC8 479 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 FMNL2Q96PY5 1086 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 FTOQ9C0B1 505 aaKnown RBP eCLIP15.3■□□□□ 0.04
LDLR-207ENST00000558013 A1BGP04217 495 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 HSP90B1P14625 803 aaKnown RBP15.3■□□□□ 0.04
LDLR-207ENST00000558013 CASP7P55210 303 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 SPATA32Q96LK8 384 aa15.3■□□□□ 0.04
LDLR-207ENST00000558013 LETM1O95202 739 aaPredicted RBP15.29■□□□□ 0.04
LDLR-207ENST00000558013 RABL6Q3YEC7 729 aaPredicted RBP15.29■□□□□ 0.04
LDLR-207ENST00000558013 USPL1Q5W0Q7 1092 aa15.29■□□□□ 0.04
LDLR-207ENST00000558013 DCAF5Q96JK2 942 aa15.29■□□□□ 0.04
LDLR-207ENST00000558013 PGBD1Q96JS3 809 aa15.29■□□□□ 0.04
LDLR-207ENST00000558013 LRRC24Q50LG9 513 aa15.29■□□□□ 0.04
LDLR-207ENST00000558013 LEO1Q8WVC0 666 aaPredicted RBP15.29■□□□□ 0.04
LDLR-207ENST00000558013 ZBTB3Q9H5J0 574 aa15.29■□□□□ 0.04
LDLR-207ENST00000558013 NR1I2O75469 434 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 NOLC1Q14978 699 aaKnown RBP eCLIP15.28■□□□□ 0.049e-6■□□□□ 9.6
LDLR-207ENST00000558013 CCDC85AQ96PX6 553 aaPredicted RBP15.28■□□□□ 0.04
LDLR-207ENST00000558013 FOXO4P98177 505 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 ATG9AQ7Z3C6 839 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 GTF3C6Q969F1 213 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 KCNF1Q9H3M0 494 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 MRVI1Q9Y6F6 885 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 TRPM3Q9HCF6 1732 aaPredicted RBP15.28■□□□□ 0.04
LDLR-207ENST00000558013 A0A087WWV3 80 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 SCRN1Q12765 414 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 ANKRD1Q15327 319 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 CSPP1Q1MSJ5 1256 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 HAUS7Q99871 368 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 NUP62CLQ9H1M0 184 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 NCOA5Q9HCD5 579 aaKnown RBP15.28■□□□□ 0.04
LDLR-207ENST00000558013 PYCARDQ9ULZ3 195 aa15.28■□□□□ 0.04
LDLR-207ENST00000558013 CCT2P78371 535 aaKnown RBP15.27■□□□□ 0.04
LDLR-207ENST00000558013 TSGA10IPQ3SY00 556 aa15.27■□□□□ 0.04
LDLR-207ENST00000558013 MCMDC2Q4G0Z9 681 aa15.27■□□□□ 0.04
LDLR-207ENST00000558013 PUS3Q9BZE2 481 aaKnown RBP15.27■□□□□ 0.04
LDLR-207ENST00000558013 CCDC192P0DO97 292 aa15.27■□□□□ 0.03
LDLR-207ENST00000558013 ATF3P18847 181 aa15.27■□□□□ 0.03
LDLR-207ENST00000558013 FGD1P98174 961 aa15.27■□□□□ 0.03
LDLR-207ENST00000558013 TYRO3Q06418 890 aa15.27■□□□□ 0.03
LDLR-207ENST00000558013 HMG20BQ9P0W2 317 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms