RNA–Protein interactions for RNA: ENST00000557511.5

PSEN1-223, Transcript of presenilin 1, humanhuman

TSL 5 BASIC

Gene PSEN1, Length 1,230 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-223ENST00000557511 TSPYL6Q8N831 410 aa10.65□□□□□ -0.7
PSEN1-223ENST00000557511 CNKSR1Q969H4 720 aa10.65□□□□□ -0.7
PSEN1-223ENST00000557511 TMEM121BQ9BXQ6 578 aaPredicted RBP10.65□□□□□ -0.7
PSEN1-223ENST00000557511 TMX4Q9H1E5 349 aaPredicted RBP10.65□□□□□ -0.7
PSEN1-223ENST00000557511 RNF123Q5XPI4 1314 aa10.64□□□□□ -0.71
PSEN1-223ENST00000557511 YBX3P16989 372 aaKnown RBP eCLIP10.64□□□□□ -0.71
PSEN1-223ENST00000557511 SUSD4Q5VX71 490 aa10.64□□□□□ -0.71
PSEN1-223ENST00000557511 LRP10Q7Z4F1 713 aa10.64□□□□□ -0.71
PSEN1-223ENST00000557511 MASTLQ96GX5 879 aa10.64□□□□□ -0.71
PSEN1-223ENST00000557511 NLRP3Q96P20 1036 aa10.64□□□□□ -0.71
PSEN1-223ENST00000557511 PHAXQ9H814 394 aaKnown RBP10.64□□□□□ -0.71
PSEN1-223ENST00000557511 TRMT112Q9UI30 125 aaKnown RBP10.64□□□□□ -0.71
PSEN1-223ENST00000557511 BCORQ6W2J9 1755 aa10.64□□□□□ -0.71
PSEN1-223ENST00000557511 IBTKQ9P2D0 1353 aaPredicted RBP10.64□□□□□ -0.71
PSEN1-223ENST00000557511 TCERG1O14776 1098 aaKnown RBP10.63□□□□□ -0.71
PSEN1-223ENST00000557511 GTPBP6O43824 516 aaPredicted RBP10.63□□□□□ -0.71
PSEN1-223ENST00000557511 NPR1P16066 1061 aa10.63□□□□□ -0.71
PSEN1-223ENST00000557511 ALDH1B1P30837 517 aa10.63□□□□□ -0.71
PSEN1-223ENST00000557511 SOGA3Q5TF21 947 aa10.63□□□□□ -0.71
PSEN1-223ENST00000557511 STYK1Q6J9G0 422 aa10.63□□□□□ -0.71
PSEN1-223ENST00000557511 NUTM1Q86Y26 1132 aa10.63□□□□□ -0.71
PSEN1-223ENST00000557511 RPGRQ92834 1020 aaKnown RBP10.63□□□□□ -0.71
PSEN1-223ENST00000557511 SH3TC1Q8TE82 1336 aa10.62□□□□□ -0.71
PSEN1-223ENST00000557511 VAMP4O75379 141 aa10.62□□□□□ -0.71
PSEN1-223ENST00000557511 HNRNPUQ00839 825 aaKnown RBP eCLIP10.62□□□□□ -0.71
PSEN1-223ENST00000557511 FKBP5Q13451 457 aaPredicted RBP10.62□□□□□ -0.71
PSEN1-223ENST00000557511 ERFEQ4G0M1 354 aa10.62□□□□□ -0.71
PSEN1-223ENST00000557511 KSR2Q6VAB6 950 aa10.62□□□□□ -0.71
PSEN1-223ENST00000557511 NLRP10Q86W26 655 aa10.62□□□□□ -0.71
PSEN1-223ENST00000557511 SPRYD3Q8NCJ5 442 aa10.62□□□□□ -0.71
PSEN1-223ENST00000557511 RBM17Q96I25 401 aaKnown RBP10.62□□□□□ -0.71
PSEN1-223ENST00000557511 MYD88Q99836 296 aa10.62□□□□□ -0.71
PSEN1-223ENST00000557511 UBN2Q6ZU65 1347 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 ZNF521Q96K83 1311 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 ATP5J2-PTCD1G3V325 749 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 NTSR2O95665 410 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 SRGNP10124 158 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 KCNA3P22001 575 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 SLFN5Q08AF3 891 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 FLIIQ13045 1269 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 ZNF428Q96B54 188 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 MAP3K2Q9Y2U5 619 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 KIF13BQ9NQT8 1826 aa10.61□□□□□ -0.71
PSEN1-223ENST00000557511 PI4KAP2A4QPH2 592 aa10.6□□□□□ -0.71
PSEN1-223ENST00000557511 TRIM28Q13263 835 aaKnown RBP10.6□□□□□ -0.71
PSEN1-223ENST00000557511 PI4KAP1Q8N8J0 262 aa10.6□□□□□ -0.71
PSEN1-223ENST00000557511 CCDC191Q8NCU4 936 aa10.6□□□□□ -0.71
PSEN1-223ENST00000557511 ISCA1Q9BUE6 129 aa10.6□□□□□ -0.71
PSEN1-223ENST00000557511 METTL22Q9BUU2 404 aaPredicted RBP10.6□□□□□ -0.71
PSEN1-223ENST00000557511 CWC25Q9NXE8 425 aaPredicted RBP10.6□□□□□ -0.71
PSEN1-223ENST00000557511 NRXN2Q9P2S2 1712 aa10.6□□□□□ -0.71
PSEN1-223ENST00000557511 AFDNP55196 1824 aaKnown RBP10.59□□□□□ -0.71
PSEN1-223ENST00000557511 C21orf2O43822 256 aa10.59□□□□□ -0.71
PSEN1-223ENST00000557511 CT47B1P0C2W7 299 aaPredicted RBP10.59□□□□□ -0.71
PSEN1-223ENST00000557511 PRPF40BQ6NWY9 871 aaKnown RBP10.59□□□□□ -0.71
PSEN1-223ENST00000557511 PAXIP1Q6ZW49 1069 aaPredicted RBP10.59□□□□□ -0.71
PSEN1-223ENST00000557511 DDX46Q7L014 1031 aaKnown RBP10.59□□□□□ -0.71
PSEN1-223ENST00000557511 N4BP2Q86UW6 1770 aaPredicted RBP10.59□□□□□ -0.71
PSEN1-223ENST00000557511 KLRG2A4D1S0 409 aaPredicted RBP10.58□□□□□ -0.72
PSEN1-223ENST00000557511 CCDC93Q567U6 631 aa10.58□□□□□ -0.72
PSEN1-223ENST00000557511 SLC10A5Q5PT55 438 aa10.58□□□□□ -0.72
PSEN1-223ENST00000557511 ZBTB38Q8NAP3 1195 aaPredicted RBP10.58□□□□□ -0.72
PSEN1-223ENST00000557511 DNAAF4Q8WXU2 420 aa10.58□□□□□ -0.72
PSEN1-223ENST00000557511 FAM89AQ96GI7 184 aa10.58□□□□□ -0.72
PSEN1-223ENST00000557511 RIC1Q4ADV7 1423 aa10.58□□□□□ -0.72
PSEN1-223ENST00000557511 ABCC12Q96J65 1359 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 NUP98P52948 1817 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 IRS4O14654 1257 aaPredicted RBP10.57□□□□□ -0.72
PSEN1-223ENST00000557511 PCCAP05165 728 aaPredicted RBP10.57□□□□□ -0.72
PSEN1-223ENST00000557511 HCLS1P14317 486 aaPredicted RBP10.57□□□□□ -0.72
PSEN1-223ENST00000557511 GRIPAP1Q4V328 841 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 RTL5Q5HYW3 569 aaPredicted RBP10.57□□□□□ -0.72
PSEN1-223ENST00000557511 CC2D2BQ6DHV5 1058 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 RTKN2Q8IZC4 609 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 CDCA7LQ96GN5 454 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 CRAMP1Q96RY5 1269 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 SMC4Q9NTJ3 1288 aa10.57□□□□□ -0.72
PSEN1-223ENST00000557511 SNPHO15079 494 aa10.56□□□□□ -0.72
PSEN1-223ENST00000557511 ALDH1L2Q3SY69 923 aa10.56□□□□□ -0.72
PSEN1-223ENST00000557511 CRY2Q49AN0 593 aa10.56□□□□□ -0.72
PSEN1-223ENST00000557511 C9orf131Q5VYM1 1079 aa10.56□□□□□ -0.72
PSEN1-223ENST00000557511 G2E3Q7L622 706 aa10.56□□□□□ -0.72
PSEN1-223ENST00000557511 TAOK3Q9H2K8 898 aa10.56□□□□□ -0.72
PSEN1-223ENST00000557511 RNF181Q9P0P0 153 aa10.56□□□□□ -0.72
PSEN1-223ENST00000557511 PPEF1O14829 653 aaPredicted RBP10.55□□□□□ -0.72
PSEN1-223ENST00000557511 BBOX1O75936 387 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 LMNB1P20700 586 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 HOXA10P31260 410 aaPredicted RBP10.55□□□□□ -0.72
PSEN1-223ENST00000557511 CCDC152Q4G0S7 254 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 SLC4A10Q6U841 1118 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 TMC4Q7Z404 712 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 LINS1Q8NG48 757 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 TMC2Q8TDI7 906 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 PTPRCP08575 1304 aa10.55□□□□□ -0.72
PSEN1-223ENST00000557511 ADCY9O60503 1353 aa10.54□□□□□ -0.72
PSEN1-223ENST00000557511 NEURL1BA8MQ27 555 aa10.54□□□□□ -0.72
PSEN1-223ENST00000557511 PDE8AO60658 829 aa10.54□□□□□ -0.72
PSEN1-223ENST00000557511 GRAPQ13588 217 aa10.54□□□□□ -0.72
PSEN1-223ENST00000557511 GRAPLQ8TC17 118 aaPredicted RBP10.54□□□□□ -0.72
PSEN1-223ENST00000557511 FAM163AQ96GL9 167 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms