RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ATP6V0A2Q9Y487 856 aa10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 CDHR2Q9BYE9 1310 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 SPEF2Q9C093 1822 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 CA12O43570 354 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 CIAPIN1Q6FI81 312 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 HHIPL1Q96JK4 782 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 CFAP44Q96MT7 982 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 PGAP2Q9UHJ9 254 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 ZNF646O15015 1829 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 ERBB4Q15303 1308 aa10.84□□□□□ -0.67
CCDC88C-214ENST00000557507 YDJCA8MPS7 323 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 RAD17O75943 681 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 KIAA2012Q0VF49 1180 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 DGKZQ13574 1117 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 PARP10Q53GL7 1025 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 DLK2Q6UY11 383 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 PPP1R42Q7Z4L9 355 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 PNISRQ8TF01 805 aaKnown RBP10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 NLRP3Q96P20 1036 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 VPS33BQ9H267 617 aa10.83□□□□□ -0.68
CCDC88C-214ENST00000557507 ANXA1P04083 346 aa10.82□□□□□ -0.68
CCDC88C-214ENST00000557507 PDIA6Q15084 440 aa10.82□□□□□ -0.68
CCDC88C-214ENST00000557507 PROSER3Q2NL68 480 aa10.82□□□□□ -0.68
CCDC88C-214ENST00000557507 SLC10A5Q5PT55 438 aa10.82□□□□□ -0.68
CCDC88C-214ENST00000557507 DPP8Q6V1X1 898 aaPredicted RBP10.82□□□□□ -0.68
CCDC88C-214ENST00000557507 SUPT20HQ8NEM7 779 aa10.82□□□□□ -0.68
CCDC88C-214ENST00000557507 UTP14AQ9BVJ6 771 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-214ENST00000557507 HCLS1P14317 486 aaPredicted RBP10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 SP8Q8IXZ3 490 aa10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 MPNDQ8N594 471 aa10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 ZC3H15Q8WU90 426 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 PLEKHF1Q96S99 279 aa10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 BCL2L13Q9BXK5 485 aa10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 TMX4Q9H1E5 349 aaPredicted RBP10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 MYH3P11055 1940 aa10.81□□□□□ -0.68
CCDC88C-214ENST00000557507 EGFRP00533 1210 aa10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 HUNKP57058 714 aa10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 NOGQ13253 232 aa10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 NFE2L2Q16236 605 aa10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 CDC37L1Q7L3B6 337 aa10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 MICALL2Q8IY33 904 aa10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 CNOT7Q9UIV1 285 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 PAPPA2Q9BXP8 1791 aa10.8□□□□□ -0.68
CCDC88C-214ENST00000557507 FAM155AB1AL88 458 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 BBOX1O75936 387 aa10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 EIF2S2P20042 333 aaKnown RBP10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 GRAPQ13588 217 aa10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 TNIP1Q15025 636 aa10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 SAMD7Q7Z3H4 446 aa10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 USP48Q86UV5 1035 aa10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 NLRP10Q86W26 655 aa10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 GRAPLQ8TC17 118 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 ZBTB12Q9Y330 459 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-214ENST00000557507 ADM5C9JUS6 153 aa10.78□□□□□ -0.68
CCDC88C-214ENST00000557507 PSMD14O00487 310 aa10.78□□□□□ -0.68
CCDC88C-214ENST00000557507 SOX10P56693 466 aa10.78□□□□□ -0.68
CCDC88C-214ENST00000557507 ZNF428Q96B54 188 aa10.78□□□□□ -0.68
CCDC88C-214ENST00000557507 PCDH10Q9P2E7 1040 aa10.78□□□□□ -0.68
CCDC88C-214ENST00000557507 TSPYL4Q9UJ04 414 aa10.78□□□□□ -0.68
CCDC88C-214ENST00000557507 RTL9Q8NET4 1388 aa10.77□□□□□ -0.68
CCDC88C-214ENST00000557507 H7C1D1 291 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 NEFMP07197 916 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 TBC1D10BQ4KMP7 808 aaPredicted RBP10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 RGMBQ6NW40 437 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 DDX46Q7L014 1031 aaKnown RBP10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 KRT26Q7Z3Y9 468 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 XAGE3Q8WTP9 111 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 NECTIN2Q92692 538 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 DBNDD1Q9H9R9 158 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 GBA2Q9HCG7 927 aaPredicted RBP10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 SH3TC1Q8TE82 1336 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 LAMB1P07942 1786 aa10.77□□□□□ -0.69
CCDC88C-214ENST00000557507 KIF23Q02241 960 aaPredicted RBP10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 AIMP1Q12904 312 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 COPS6Q7L5N1 327 aa10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 DPF2Q92785 391 aa10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 KCNQ5Q9NR82 932 aa10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 SAGE1Q9NXZ1 904 aa10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 TRMT112Q9UI30 125 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 ASTN2O75129 1339 aaPredicted RBP10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 MAPK8IP3Q9UPT6 1336 aa10.76□□□□□ -0.69
CCDC88C-214ENST00000557507 ECM29Q5VYK3 1845 aa10.75□□□□□ -0.69
CCDC88C-214ENST00000557507 KIAA0100Q14667 2235 aaKnown RBP10.75□□□□□ -0.69
CCDC88C-214ENST00000557507 RIMBP2O15034 1052 aa10.75□□□□□ -0.69
CCDC88C-214ENST00000557507 TCIRG1Q13488 830 aa10.75□□□□□ -0.69
CCDC88C-214ENST00000557507 HSP90AB3PQ58FF7 597 aa10.75□□□□□ -0.69
CCDC88C-214ENST00000557507 CELF1Q92879 486 aaKnown RBP10.75□□□□□ -0.69
CCDC88C-214ENST00000557507 RNF186Q9NXI6 227 aa10.75□□□□□ -0.69
CCDC88C-214ENST00000557507 ECE2O60344 883 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 TRPA1O75762 1119 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 SLC10A3P09131 477 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 ZNF157P51786 506 aaPredicted RBP10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 GPSM2P81274 684 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 KRT24Q2M2I5 525 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 WASHC4Q2M389 1173 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 KIF4BQ2VIQ3 1234 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 RBM26Q5T8P6 1007 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 TMC4Q7Z404 712 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 C2orf69Q8N8R5 385 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 GGA3Q9NZ52 723 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms