RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 TRIM17Q9Y577 477 aa12.92□□□□□ -0.34
NEDD1-211ENST00000557454 VCANP13611 3396 aa12.91□□□□□ -0.34
NEDD1-211ENST00000557454 RIC1Q4ADV7 1423 aa12.91□□□□□ -0.34
NEDD1-211ENST00000557454 TNIP1Q15025 636 aa12.91□□□□□ -0.34
NEDD1-211ENST00000557454 NUTM1Q86Y26 1132 aa12.91□□□□□ -0.34
NEDD1-211ENST00000557454 DCPSQ96C86 337 aaKnown RBP12.91□□□□□ -0.34
NEDD1-211ENST00000557454 ZBTB12Q9Y330 459 aaPredicted RBP12.91□□□□□ -0.34
NEDD1-211ENST00000557454 RBBP6Q7Z6E9 1792 aaKnown RBP12.9□□□□□ -0.34
NEDD1-211ENST00000557454 HOXA10P31260 410 aaPredicted RBP12.9□□□□□ -0.34
NEDD1-211ENST00000557454 ZNF790Q6PG37 636 aa12.9□□□□□ -0.34
NEDD1-211ENST00000557454 CDCA5Q96FF9 252 aa12.9□□□□□ -0.34
NEDD1-211ENST00000557454 OTOP1Q7RTM1 612 aa12.89□□□□□ -0.35
NEDD1-211ENST00000557454 VPS33BQ9H267 617 aa12.89□□□□□ -0.35
NEDD1-211ENST00000557454 KIF7Q2M1P5 1343 aa12.88□□□□□ -0.35
NEDD1-211ENST00000557454 PRAMEF22A3QJZ6 481 aa12.88□□□□□ -0.35
NEDD1-211ENST00000557454 YDJCA8MPS7 323 aa12.88□□□□□ -0.35
NEDD1-211ENST00000557454 CDCA8Q53HL2 280 aa12.88□□□□□ -0.35
NEDD1-211ENST00000557454 RBM26Q5T8P6 1007 aaKnown RBP12.88□□□□□ -0.35
NEDD1-211ENST00000557454 SULF1Q8IWU6 871 aa12.88□□□□□ -0.35
NEDD1-211ENST00000557454 COL25A1Q9BXS0 654 aaPredicted RBP12.88□□□□□ -0.35
NEDD1-211ENST00000557454 GGA3Q9NZ52 723 aa12.88□□□□□ -0.35
NEDD1-211ENST00000557454 KIAA2012Q0VF49 1180 aa12.87□□□□□ -0.35
NEDD1-211ENST00000557454 MKRN3Q13064 507 aaKnown RBP12.87□□□□□ -0.35
NEDD1-211ENST00000557454 MTHFSDQ2M296 383 aaKnown RBP12.87□□□□□ -0.35
NEDD1-211ENST00000557454 MOB2Q70IA6 237 aa12.87□□□□□ -0.35
NEDD1-211ENST00000557454 SUPT20HQ8NEM7 779 aa12.87□□□□□ -0.35
NEDD1-211ENST00000557454 ARMC5Q96C12 935 aa12.87□□□□□ -0.35
NEDD1-211ENST00000557454 RBM17Q96I25 401 aaKnown RBP12.87□□□□□ -0.35
NEDD1-211ENST00000557454 FMNL2Q96PY5 1086 aa12.87□□□□□ -0.35
NEDD1-211ENST00000557454 CRAMP1Q96RY5 1269 aa12.87□□□□□ -0.35
NEDD1-211ENST00000557454 RTFDC1Q9BY42 306 aaPredicted RBP12.87□□□□□ -0.35
NEDD1-211ENST00000557454 ASTN2O75129 1339 aaPredicted RBP12.87□□□□□ -0.35
NEDD1-211ENST00000557454 IL13P35225 146 aa12.86□□□□□ -0.35
NEDD1-211ENST00000557454 TM4SF4P48230 202 aa12.86□□□□□ -0.35
NEDD1-211ENST00000557454 HLFQ16534 295 aa12.86□□□□□ -0.35
NEDD1-211ENST00000557454 DPF2Q92785 391 aa12.86□□□□□ -0.35
NEDD1-211ENST00000557454 CFHR5Q9BXR6 569 aa12.86□□□□□ -0.35
NEDD1-211ENST00000557454 ATP6V0A2Q9Y487 856 aa12.86□□□□□ -0.35
NEDD1-211ENST00000557454 PSMD14O00487 310 aa12.85□□□□□ -0.35
NEDD1-211ENST00000557454 DPP8Q6V1X1 898 aaPredicted RBP12.85□□□□□ -0.35
NEDD1-211ENST00000557454 C3orf67Q6ZVT6 689 aa12.85□□□□□ -0.35
NEDD1-211ENST00000557454 TMEM106CQ9BVX2 250 aa12.85□□□□□ -0.35
NEDD1-211ENST00000557454 NYXQ9GZU5 481 aa12.85□□□□□ -0.35
NEDD1-211ENST00000557454 TMX4Q9H1E5 349 aaPredicted RBP12.85□□□□□ -0.35
NEDD1-211ENST00000557454 USP16Q9Y5T5 823 aa12.85□□□□□ -0.35
NEDD1-211ENST00000557454 SPTBN5Q9NRC6 3674 aaKnown RBP12.84□□□□□ -0.35
NEDD1-211ENST00000557454 SOX1O00570 391 aaPredicted RBP12.84□□□□□ -0.35
NEDD1-211ENST00000557454 RGL2O15211 777 aa12.84□□□□□ -0.35
NEDD1-211ENST00000557454 KCNQ3O43525 872 aa12.84□□□□□ -0.35
NEDD1-211ENST00000557454 FKBP1BP68106 108 aa12.84□□□□□ -0.35
NEDD1-211ENST00000557454 TEFQ10587 303 aa12.84□□□□□ -0.35
NEDD1-211ENST00000557454 KIF4BQ2VIQ3 1234 aa12.84□□□□□ -0.35
NEDD1-211ENST00000557454 PTPN22Q9Y2R2 807 aa12.84□□□□□ -0.35
NEDD1-211ENST00000557454 POLR2AP24928 1970 aaKnown RBP12.83□□□□□ -0.35
NEDD1-211ENST00000557454 UBE2Q2LH0YL09 131 aa12.83□□□□□ -0.36
NEDD1-211ENST00000557454 HMOX1P09601 288 aa12.83□□□□□ -0.36
NEDD1-211ENST00000557454 SREBF2Q12772 1141 aa12.83□□□□□ -0.36
NEDD1-211ENST00000557454 LRCH3Q96II8 777 aa12.83□□□□□ -0.36
NEDD1-211ENST00000557454 PRO3102Q9H379 93 aa12.83□□□□□ -0.36
NEDD1-211ENST00000557454 ZNF333Q96JL9 665 aa12.82□□□□□ -0.36
NEDD1-211ENST00000557454 ZNF609O15014 1411 aa12.81□□□□□ -0.36
NEDD1-211ENST00000557454 NBPF26B4DH59 902 aa12.81□□□□□ -0.36
NEDD1-211ENST00000557454 NBPF10Q6P3W6 841 aaKnown RBP12.81□□□□□ -0.36
NEDD1-211ENST00000557454 MPNDQ8N594 471 aa12.81□□□□□ -0.36
NEDD1-211ENST00000557454 ABCC4O15439 1325 aa12.81□□□□□ -0.36
NEDD1-211ENST00000557454 SLC4A8Q2Y0W8 1093 aa12.8□□□□□ -0.36
NEDD1-211ENST00000557454 ANGEL2Q5VTE6 544 aaKnown RBP12.8□□□□□ -0.36
NEDD1-211ENST00000557454 IL17REQ8NFR9 667 aa12.8□□□□□ -0.36
NEDD1-211ENST00000557454 CD99L2Q8TCZ2 262 aa12.8□□□□□ -0.36
NEDD1-211ENST00000557454 GPTP24298 496 aa12.79□□□□□ -0.36
NEDD1-211ENST00000557454 RPS12P25398 132 aaKnown RBP12.79□□□□□ -0.36
NEDD1-211ENST00000557454 DPF3Q92784 378 aa12.79□□□□□ -0.36
NEDD1-211ENST00000557454 ERO1AQ96HE7 468 aa12.79□□□□□ -0.36
NEDD1-211ENST00000557454 DBNDD1Q9H9R9 158 aa12.79□□□□□ -0.36
NEDD1-211ENST00000557454 UBN2Q6ZU65 1347 aa12.79□□□□□ -0.36
NEDD1-211ENST00000557454 IBTKQ9P2D0 1353 aaPredicted RBP12.79□□□□□ -0.36
NEDD1-211ENST00000557454 DUOX1Q9NRD9 1551 aa12.78□□□□□ -0.36
NEDD1-211ENST00000557454 MYCP01106 439 aaPredicted RBP12.78□□□□□ -0.36
NEDD1-211ENST00000557454 TTLL12Q14166 644 aaPredicted RBP12.78□□□□□ -0.36
NEDD1-211ENST00000557454 RNF39Q9H2S5 420 aa12.78□□□□□ -0.36
NEDD1-211ENST00000557454 EFCC1Q9HA90 598 aa12.78□□□□□ -0.36
NEDD1-211ENST00000557454 SCAF8Q9UPN6 1271 aaKnown RBP12.78□□□□□ -0.36
NEDD1-211ENST00000557454 RTL9Q8NET4 1388 aa12.78□□□□□ -0.36
NEDD1-211ENST00000557454 ALDH1A1P00352 501 aa12.77□□□□□ -0.37
NEDD1-211ENST00000557454 CAP1Q01518 475 aa12.77□□□□□ -0.37
NEDD1-211ENST00000557454 SCARF1Q14162 830 aa12.77□□□□□ -0.37
NEDD1-211ENST00000557454 SUSD4Q5VX71 490 aa12.77□□□□□ -0.37
NEDD1-211ENST00000557454 SP8Q8IXZ3 490 aa12.77□□□□□ -0.37
NEDD1-211ENST00000557454 KCNQ5Q9NR82 932 aa12.77□□□□□ -0.37
NEDD1-211ENST00000557454 SIPA1L3O60292 1781 aaPredicted RBP12.76□□□□□ -0.37
NEDD1-211ENST00000557454 WTIPA6NIX2 430 aaPredicted RBP12.76□□□□□ -0.37
NEDD1-211ENST00000557454 BTBD11A6QL63 1104 aa12.76□□□□□ -0.37
NEDD1-211ENST00000557454 NTSR2O95665 410 aa12.76□□□□□ -0.37
NEDD1-211ENST00000557454 SLC9C1Q4G0N8 1177 aa12.76□□□□□ -0.37
NEDD1-211ENST00000557454 PRAMEF18Q5VWM3 479 aa12.76□□□□□ -0.37
NEDD1-211ENST00000557454 PRDM6Q9NQX0 595 aa12.76□□□□□ -0.37
NEDD1-211ENST00000557454 SNRPA1P09661 255 aaKnown RBP12.75□□□□□ -0.37
NEDD1-211ENST00000557454 IFNL1Q8IU54 200 aa12.75□□□□□ -0.37
NEDD1-211ENST00000557454 STXBP5LQ9Y2K9 1186 aa12.75□□□□□ -0.37
NEDD1-211ENST00000557454 PTCH2Q9Y6C5 1203 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms