RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 ZFATQ9P243 1243 aa6.93□□□□□ -1.3
SRP54-212ENST00000556992 RBM19Q9Y4C8 960 aaKnown RBP6.93□□□□□ -1.3
SRP54-212ENST00000556992 NESP48681 1621 aa6.93□□□□□ -1.3
SRP54-212ENST00000556992 TNIKQ9UKE5 1360 aa6.93□□□□□ -1.3
SRP54-212ENST00000556992 ZBTB42B2RXF5 422 aa6.92□□□□□ -1.3
SRP54-212ENST00000556992 HYAL3O43820 417 aaPredicted RBP6.92□□□□□ -1.3
SRP54-212ENST00000556992 TRIM26Q12899 539 aaPredicted RBP6.92□□□□□ -1.3
SRP54-212ENST00000556992 LPIN3Q9BQK8 851 aa6.92□□□□□ -1.3
SRP54-212ENST00000556992 SSBP4Q9BWG4 385 aaPredicted RBP6.92□□□□□ -1.3
SRP54-212ENST00000556992 TFIP11Q9UBB9 837 aaKnown RBP6.92□□□□□ -1.3
SRP54-212ENST00000556992 DMGDHQ9UI17 866 aaKnown RBP6.92□□□□□ -1.3
SRP54-212ENST00000556992 USP20Q9Y2K6 914 aa6.92□□□□□ -1.3
SRP54-212ENST00000556992 TARSP26639 723 aaKnown RBP6.91□□□□□ -1.3
SRP54-212ENST00000556992 IREB2P48200 963 aaKnown RBP6.91□□□□□ -1.3
SRP54-212ENST00000556992 SEC13P55735 322 aa6.91□□□□□ -1.3
SRP54-212ENST00000556992 LRP8Q14114 963 aa6.91□□□□□ -1.3
SRP54-212ENST00000556992 GRIK5Q16478 980 aa6.91□□□□□ -1.3
SRP54-212ENST00000556992 CRTC2Q53ET0 693 aaPredicted RBP6.91□□□□□ -1.3
SRP54-212ENST00000556992 PERM1Q5SV97 790 aa6.91□□□□□ -1.3
SRP54-212ENST00000556992 MSL1Q68DK7 614 aa6.91□□□□□ -1.3
SRP54-212ENST00000556992 HFE2Q6ZVN8 426 aa6.91□□□□□ -1.3
SRP54-212ENST00000556992 TGFBR3LH3BV60 316 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 NOS3P29474 1203 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 IDH3AP50213 366 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 RTN1Q16799 776 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 ILDR2Q71H61 639 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 GLMNQ92990 594 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 CLUAP1Q96AJ1 413 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 PCGF6Q9BYE7 350 aa6.9□□□□□ -1.3
SRP54-212ENST00000556992 SASH3O75995 380 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 DPYDQ12882 1025 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 DGKZQ13574 1117 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 STAG2Q8N3U4 1231 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 WFDC12Q8WWY7 111 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 IFT43Q96FT9 208 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 MEGF10Q96KG7 1140 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 KRTAP4-12Q9BQ66 201 aa6.89□□□□□ -1.31
SRP54-212ENST00000556992 MAFBQ9Y5Q3 323 aaPredicted RBP6.89□□□□□ -1.31
SRP54-212ENST00000556992 THOC2Q8NI27 1593 aaKnown RBP6.89□□□□□ -1.31
SRP54-212ENST00000556992 RUSC2Q8N2Y8 1516 aa6.88□□□□□ -1.31
SRP54-212ENST00000556992 KIF27Q86VH2 1401 aa6.88□□□□□ -1.31
SRP54-212ENST00000556992 PDS5BQ9NTI5 1447 aa6.88□□□□□ -1.31
SRP54-212ENST00000556992 INPP5BP32019 993 aa6.88□□□□□ -1.31
SRP54-212ENST00000556992 IER5Q5VY09 327 aa6.88□□□□□ -1.31
SRP54-212ENST00000556992 DHX32Q7L7V1 743 aaKnown RBP6.88□□□□□ -1.31
SRP54-212ENST00000556992 DEAF1O75398 565 aaPredicted RBP6.87□□□□□ -1.31
SRP54-212ENST00000556992 ALX3O95076 343 aa6.87□□□□□ -1.31
SRP54-212ENST00000556992 RARAP10276 462 aa6.87□□□□□ -1.31
SRP54-212ENST00000556992 HIF1AQ16665 826 aa6.87□□□□□ -1.31
SRP54-212ENST00000556992 LCE3BQ5TA77 95 aa6.87□□□□□ -1.31
SRP54-212ENST00000556992 ELMSAN1Q6PJG2 1045 aa6.87□□□□□ -1.31
SRP54-212ENST00000556992 FBXO11Q86XK2 927 aa6.87□□□□□ -1.31
SRP54-212ENST00000556992 SMG9Q9H0W8 520 aaKnown RBP6.87□□□□□ -1.31
SRP54-212ENST00000556992 QTRT2Q9H974 415 aaKnown RBP6.87□□□□□ -1.31
SRP54-212ENST00000556992 SYNJ1O43426 1573 aa6.86□□□□□ -1.31
SRP54-212ENST00000556992 GOLGA3Q08378 1498 aa6.86□□□□□ -1.31
SRP54-212ENST00000556992 FANCD2Q9BXW9 1451 aa6.86□□□□□ -1.31
SRP54-212ENST00000556992 CEP164Q9UPV0 1460 aa6.86□□□□□ -1.31
SRP54-212ENST00000556992 PTK7Q13308 1070 aa6.86□□□□□ -1.31
SRP54-212ENST00000556992 LARP1Q6PKG0 1096 aaKnown RBP6.86□□□□□ -1.31
SRP54-212ENST00000556992 WFDC8Q8IUA0 241 aa6.86□□□□□ -1.31
SRP54-212ENST00000556992 TOP2BQ02880 1626 aa6.86□□□□□ -1.31
SRP54-212ENST00000556992 J3QW42 95 aa6.85□□□□□ -1.31
SRP54-212ENST00000556992 EIF2AK2P19525 551 aaKnown RBP6.85□□□□□ -1.31
SRP54-212ENST00000556992 CUX1P39880 1505 aa6.85□□□□□ -1.31
SRP54-212ENST00000556992 USP17L15C9J2P7 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L10C9JJH3 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L13C9JLJ4 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L12C9JPN9 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L11C9JVI0 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L21D6R901 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L18D6R9N7 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L22D6RA61 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L17D6RBQ6 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L19D6RCP7 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L20D6RJB6 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 EPB42P16452 691 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 IGFBP4P22692 258 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 ARSDP51689 593 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 USP17L24Q0WX57 530 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 FLIIQ13045 1269 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 KANK4Q5T7N3 995 aaPredicted RBP6.84□□□□□ -1.31
SRP54-212ENST00000556992 TRPM4Q8TD43 1214 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 EFCC1Q9HA90 598 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 FRRS1LQ9P0K9 344 aa6.84□□□□□ -1.31
SRP54-212ENST00000556992 MICAL2O94851 1124 aa6.83□□□□□ -1.32
SRP54-212ENST00000556992 MAP3K6O95382 1288 aa6.83□□□□□ -1.32
SRP54-212ENST00000556992 GPLD1P80108 840 aa6.83□□□□□ -1.32
SRP54-212ENST00000556992 GDF6Q6KF10 455 aaPredicted RBP6.83□□□□□ -1.32
SRP54-212ENST00000556992 ANKMY2Q8IV38 441 aa6.83□□□□□ -1.32
SRP54-212ENST00000556992 NSUN5Q96P11 429 aaKnown RBP6.83□□□□□ -1.32
SRP54-212ENST00000556992 CEP162Q5TB80 1403 aa6.83□□□□□ -1.32
SRP54-212ENST00000556992 PRR23CQ6ZRP0 262 aa6.82□□□□□ -1.32
SRP54-212ENST00000556992 RGL4Q8IZJ4 473 aa6.82□□□□□ -1.32
SRP54-212ENST00000556992 AGGF1Q8N302 714 aaeCLIP6.82□□□□□ -1.32
SRP54-212ENST00000556992 DTWD1Q8N5C7 304 aa6.82□□□□□ -1.32
SRP54-212ENST00000556992 PPP1R12CQ9BZL4 782 aa6.82□□□□□ -1.32
SRP54-212ENST00000556992 LRFN2Q9ULH4 789 aa6.82□□□□□ -1.32
SRP54-212ENST00000556992 PRXQ9BXM0 1461 aa6.81□□□□□ -1.32
SRP54-212ENST00000556992 OPLAHO14841 1288 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms