RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 ERICH6BQ5W0A0 696 aa12.18□□□□□ -0.46
TMEM260-213ENST00000556929 SUCLG2Q96I99 432 aa12.18□□□□□ -0.46
TMEM260-213ENST00000556929 PLA2G12BQ9BX93 195 aa12.18□□□□□ -0.46
TMEM260-213ENST00000556929 RIC1Q4ADV7 1423 aa12.18□□□□□ -0.46
TMEM260-213ENST00000556929 ANKRD31Q8N7Z5 1873 aa12.17□□□□□ -0.46
TMEM260-213ENST00000556929 NLRP3Q96P20 1036 aa12.17□□□□□ -0.46
TMEM260-213ENST00000556929 LRRFIP2Q9Y608 721 aaKnown RBP12.17□□□□□ -0.46
TMEM260-213ENST00000556929 KIF13BQ9NQT8 1826 aa12.16□□□□□ -0.46
TMEM260-213ENST00000556929 RPAP2Q8IXW5 612 aaPredicted RBP12.16□□□□□ -0.46
TMEM260-213ENST00000556929 SYNE4Q8N205 404 aa12.16□□□□□ -0.46
TMEM260-213ENST00000556929 BICC1Q9H694 974 aaKnown RBP12.16□□□□□ -0.46
TMEM260-213ENST00000556929 C1orf115Q9H7X2 142 aa12.16□□□□□ -0.46
TMEM260-213ENST00000556929 SPON1Q9HCB6 807 aa12.16□□□□□ -0.46
TMEM260-213ENST00000556929 TNRC6CQ9HCJ0 1690 aaKnown RBP12.16□□□□□ -0.46
TMEM260-213ENST00000556929 HCLS1P14317 486 aaPredicted RBP12.15□□□□□ -0.46
TMEM260-213ENST00000556929 PDE6BP35913 854 aa12.15□□□□□ -0.46
TMEM260-213ENST00000556929 CCDC24Q8N4L8 307 aa12.15□□□□□ -0.46
TMEM260-213ENST00000556929 ABCC12Q96J65 1359 aa12.15□□□□□ -0.46
TMEM260-213ENST00000556929 CTSWP56202 376 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 FOXO4P98177 505 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 RABL6Q3YEC7 729 aaPredicted RBP12.14□□□□□ -0.47
TMEM260-213ENST00000556929 CCDC152Q4G0S7 254 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 LMBR1LQ6UX01 489 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 PIP4P2Q8N4L2 257 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 KAZALD1Q96I82 304 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 BRIP1Q9BX63 1249 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 PDZRN3Q9UPQ7 1066 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 CHMP3Q9Y3E7 222 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 SPEF2Q9C093 1822 aa12.14□□□□□ -0.47
TMEM260-213ENST00000556929 CACNA1SQ13698 1873 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 HMMRO75330 724 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 CSF1RP07333 972 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 ATP8B2P98198 1209 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 MTX1Q13505 466 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 SF3B3Q15393 1217 aaKnown RBP12.13□□□□□ -0.47
TMEM260-213ENST00000556929 EPHA10Q5JZY3 1008 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 CEP85Q6P2H3 762 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 ANKRD44Q8N8A2 993 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 TTLL11Q8NHH1 800 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 SGIP1Q9BQI5 828 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 DLEC1Q9Y238 1755 aa12.13□□□□□ -0.47
TMEM260-213ENST00000556929 C10orf71Q711Q0 1435 aa12.12□□□□□ -0.47
TMEM260-213ENST00000556929 SRGAP3O43295 1099 aa12.12□□□□□ -0.47
TMEM260-213ENST00000556929 PTGER2P43116 358 aa12.12□□□□□ -0.47
TMEM260-213ENST00000556929 CCDC57Q2TAC2 916 aa12.12□□□□□ -0.47
TMEM260-213ENST00000556929 RPGRQ92834 1020 aaKnown RBP12.12□□□□□ -0.47
TMEM260-213ENST00000556929 COL11A2P13942 1736 aaPredicted RBP12.11□□□□□ -0.47
TMEM260-213ENST00000556929 TAF1P21675 1872 aa12.11□□□□□ -0.47
TMEM260-213ENST00000556929 RTL9Q8NET4 1388 aa12.11□□□□□ -0.47
TMEM260-213ENST00000556929 ANKRD18BA2A2Z9 1011 aa12.11□□□□□ -0.47
TMEM260-213ENST00000556929 KLRG2A4D1S0 409 aaPredicted RBP12.11□□□□□ -0.47
TMEM260-213ENST00000556929 IFIT5Q13325 482 aaKnown RBP12.11□□□□□ -0.47
TMEM260-213ENST00000556929 DDX46Q7L014 1031 aaKnown RBP12.11□□□□□ -0.47
TMEM260-213ENST00000556929 RBM17Q96I25 401 aaKnown RBP12.11□□□□□ -0.47
TMEM260-213ENST00000556929 CCDC85AQ96PX6 553 aaPredicted RBP12.11□□□□□ -0.47
TMEM260-213ENST00000556929 PCDHB15Q9Y5E8 787 aa12.11□□□□□ -0.47
TMEM260-213ENST00000556929 PNMA6EA0A0J9YXQ4 647 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 H0YIN7 160 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 NPR1P16066 1061 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 ITGA6P23229 1130 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 TGFB2P61812 414 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 TAF7LQ5H9L4 462 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 SPDYE1Q8NFV5 336 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-213ENST00000556929 SSH3Q8TE77 659 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 CDC5LQ99459 802 aaKnown RBP12.1□□□□□ -0.47
TMEM260-213ENST00000556929 RWDD1Q9H446 243 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-213ENST00000556929 GREM2Q9H772 168 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 CD2APQ9Y5K6 639 aa12.1□□□□□ -0.47
TMEM260-213ENST00000556929 KIAA1551Q9HCM1 1747 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 ALDH1B1P30837 517 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 FXR2P51116 673 aaKnown RBP eCLIP12.09□□□□□ -0.47
TMEM260-213ENST00000556929 FAM161AQ3B820 660 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 CRY2Q49AN0 593 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 C3orf67Q6ZVT6 689 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 C2CD5Q86YS7 1000 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 KLHL34Q8N239 644 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 MASTLQ96GX5 879 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 PPP4R2Q9NY27 417 aa12.09□□□□□ -0.47
TMEM260-213ENST00000556929 PPP1R1BQ9UD71 204 aaPredicted RBP12.09□□□□□ -0.47
TMEM260-213ENST00000556929 SRGNP10124 158 aa12.08□□□□□ -0.48
TMEM260-213ENST00000556929 IGHMBP2P38935 993 aaKnown RBP12.08□□□□□ -0.48
TMEM260-213ENST00000556929 HDAC1Q13547 482 aaPredicted RBP12.08□□□□□ -0.48
TMEM260-213ENST00000556929 SIRT2Q8IXJ6 389 aa12.08□□□□□ -0.48
TMEM260-213ENST00000556929 CCDC136Q96JN2 1154 aa12.08□□□□□ -0.48
TMEM260-213ENST00000556929 CRAMP1Q96RY5 1269 aa12.08□□□□□ -0.48
TMEM260-213ENST00000556929 FBXO3Q9UK99 471 aa12.08□□□□□ -0.48
TMEM260-213ENST00000556929 LRP5O75197 1615 aa12.08□□□□□ -0.48
TMEM260-213ENST00000556929 HOXA10P31260 410 aaPredicted RBP12.07□□□□□ -0.48
TMEM260-213ENST00000556929 BRCA1P38398 1863 aaKnown RBP12.07□□□□□ -0.48
TMEM260-213ENST00000556929 RFX5P48382 616 aaPredicted RBP12.07□□□□□ -0.48
TMEM260-213ENST00000556929 G3BP1Q13283 466 aaKnown RBP eCLIP12.07□□□□□ -0.48
TMEM260-213ENST00000556929 GRAPQ13588 217 aa12.07□□□□□ -0.48
TMEM260-213ENST00000556929 HSP90AB4PQ58FF6 505 aa12.07□□□□□ -0.48
TMEM260-213ENST00000556929 STYK1Q6J9G0 422 aa12.07□□□□□ -0.48
TMEM260-213ENST00000556929 ANKRD18AQ8IVF6 992 aa12.07□□□□□ -0.48
TMEM260-213ENST00000556929 GRAPLQ8TC17 118 aaPredicted RBP12.07□□□□□ -0.48
TMEM260-213ENST00000556929 ZNF622Q969S3 477 aaKnown RBP eCLIP12.07□□□□□ -0.48
TMEM260-213ENST00000556929 MPHOSPH8Q99549 860 aa12.07□□□□□ -0.48
TMEM260-213ENST00000556929 COPRSQ9NQ92 184 aa12.07□□□□□ -0.48
TMEM260-213ENST00000556929 SEC31BQ9NQW1 1179 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms