RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	CRY2	Q49AN0	593 aa		11.59	□□□□□ -0.55
SYNE2-222	ENST00000556725	BEGAIN	Q9BUH8	593 aa		11.59	□□□□□ -0.55
SYNE2-222	ENST00000556725	TLL2	Q9Y6L7	1015 aa		11.59	□□□□□ -0.55
SYNE2-222	ENST00000556725	CASP8AP2	Q9UKL3	1982 aa		11.58	□□□□□ -0.56
SYNE2-222	ENST00000556725	THSD7B	Q9C0I4	1608 aa		11.58	□□□□□ -0.56
SYNE2-222	ENST00000556725	USP50	Q70EL3	339 aa	Predicted RBP	11.58	□□□□□ -0.56
SYNE2-222	ENST00000556725	LARGE2	Q8N3Y3	721 aa		11.58	□□□□□ -0.56
SYNE2-222	ENST00000556725	SLAIN1	Q8ND83	568 aa		11.58	□□□□□ -0.56
SYNE2-222	ENST00000556725	MIS18A	Q9NYP9	233 aa		11.58	□□□□□ -0.56
SYNE2-222	ENST00000556725	RGL2	O15211	777 aa		11.57	□□□□□ -0.56
SYNE2-222	ENST00000556725	CC2D2B	Q6DHV5	1058 aa		11.57	□□□□□ -0.56
SYNE2-222	ENST00000556725	CFAP44	Q96MT7	982 aa		11.57	□□□□□ -0.56
SYNE2-222	ENST00000556725	MCOLN1	Q9GZU1	580 aa		11.57	□□□□□ -0.56
SYNE2-222	ENST00000556725	NUP98	P52948	1817 aa		11.57	□□□□□ -0.56
SYNE2-222	ENST00000556725	GPT	P24298	496 aa		11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	HOXA10	P31260	410 aa	Predicted RBP	11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	MAP2K2	P36507	400 aa		11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	SUSD4	Q5VX71	490 aa		11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	TTLL7	Q6ZT98	887 aa		11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	C3orf67	Q6ZVT6	689 aa		11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	SAPCD2	Q86UD0	394 aa		11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	RPGR	Q92834	1020 aa	Known RBP	11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	UBN2	Q6ZU65	1347 aa		11.56	□□□□□ -0.56
SYNE2-222	ENST00000556725	CELF2	O95319	508 aa	Known RBP	11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	CXCL9	Q07325	125 aa		11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	AOC3	Q16853	763 aa		11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	NIM1K	Q8IY84	436 aa		11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	RTF1	Q92541	710 aa	Known RBP	11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	ZIC5	Q96T25	663 aa		11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	NYX	Q9GZU5	481 aa		11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	ADARB2	Q9NS39	739 aa	Known RBP	11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	GPRC5D	Q9NZD1	345 aa		11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	RRP7A	Q9Y3A4	280 aa	Known RBP	11.55	□□□□□ -0.56
SYNE2-222	ENST00000556725	ERVV-1	B6SEH8	477 aa		11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	PPEF1	O14829	653 aa	Predicted RBP	11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	PPIP5K2	O43314	1243 aa		11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	HIRA	P54198	1017 aa	Predicted RBP	11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	MMRN1	Q13201	1228 aa		11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	TAF7	Q15545	349 aa	Predicted RBP	11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	CRAMP1	Q96RY5	1269 aa		11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	MAP3K15	Q6ZN16	1313 aa		11.54	□□□□□ -0.56
SYNE2-222	ENST00000556725	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	MYL6B	P14649	208 aa		11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	GMPS	P49915	693 aa	Predicted RBP	11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	DGKZ	Q13574	1117 aa		11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	CIAPIN1	Q6FI81	312 aa		11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	DLK2	Q6UY11	383 aa		11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	RBM17	Q96I25	401 aa	Known RBP	11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	ZBTB3	Q9H5J0	574 aa		11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	ZNF408	Q9H9D4	720 aa		11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	NPC1L1	Q9UHC9	1359 aa		11.53	□□□□□ -0.56
SYNE2-222	ENST00000556725	SHTN1	A0MZ66	631 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	NTSR2	O95665	410 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	GRIPAP1	Q4V328	841 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	SPNS2	Q8IVW8	549 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	ZNF34	Q8IZ26	560 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	PGAP2	Q9UHJ9	254 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	FBXO3	Q9UK99	471 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	RIC1	Q4ADV7	1423 aa		11.52	□□□□□ -0.57
SYNE2-222	ENST00000556725	CA12	O43570	354 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	RAD17	O75943	681 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	BRPF1	P55201	1214 aa	Predicted RBP	11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	TRPM4	Q8TD43	1214 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	HHIPL1	Q96JK4	782 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	CFAP53	Q96M91	514 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	ZNRF3	Q9ULT6	936 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	NUDC	Q9Y266	331 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	ATP6V0A2	Q9Y487	856 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	PCDHB13	Q9Y5F0	798 aa		11.51	□□□□□ -0.57
SYNE2-222	ENST00000556725	LAMB4	A4D0S4	1761 aa		11.5	□□□□□ -0.57
SYNE2-222	ENST00000556725	HTATSF1	O43719	755 aa	Known RBP	11.5	□□□□□ -0.57
SYNE2-222	ENST00000556725	EIF4A1	P60842	406 aa	Known RBP	11.5	□□□□□ -0.57
SYNE2-222	ENST00000556725	KIF6	Q6ZMV9	814 aa		11.5	□□□□□ -0.57
SYNE2-222	ENST00000556725	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	USP48	Q86UV5	1035 aa		11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	NLRP3	Q96P20	1036 aa		11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	THUMPD2	Q9BTF0	503 aa	Known RBP	11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	VPS33B	Q9H267	617 aa		11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	ABCC4	O15439	1325 aa		11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.49	□□□□□ -0.57
SYNE2-222	ENST00000556725	YDJC	A8MPS7	323 aa		11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	PPP2R1A	P30153	589 aa		11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	SLC10A5	Q5PT55	438 aa		11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	CDC37L1	Q7L3B6	337 aa		11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	PPP1R42	Q7Z4L9	355 aa		11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	MIER1	Q8N108	512 aa		11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	ZC3H15	Q8WU90	426 aa	Known RBP	11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	BCL2L13	Q9BXK5	485 aa		11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	CNOT7	Q9UIV1	285 aa	Known RBP	11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	POLR2A	P24928	1970 aa	Known RBP	11.48	□□□□□ -0.57
SYNE2-222	ENST00000556725	DLG5	Q8TDM6	1919 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	TAF1	P21675	1872 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	SOX10	P56693	466 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	HUNK	P57058	714 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	NOG	Q13253	232 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	DPP8	Q6V1X1	898 aa	Predicted RBP	11.47	□□□□□ -0.57

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