RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LRRFIP1Q32MZ4 808 aaKnown RBP17.49■□□□□ 0.39
CUX1-215ENST00000556210 HS1BP3Q53T59 392 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 RASSF8Q8NHQ8 419 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 SLC52A2Q9HAB3 445 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 TTC41PQ6P2S7 1318 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 CDC37L1Q7L3B6 337 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 PES1O00541 588 aaKnown RBP17.48■□□□□ 0.39
CUX1-215ENST00000556210 DYNC1I1O14576 645 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 SMC2O95347 1197 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 MCM5P33992 734 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 EPHA10Q5JZY3 1008 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 MPHOSPH8Q99549 860 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 OSBPL3Q9H4L5 887 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 DEPDC5O75140 1603 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 NEURL1BA8MQ27 555 aa17.48■□□□□ 0.39
CUX1-215ENST00000556210 CBX1P83916 185 aa17.47■□□□□ 0.39
CUX1-215ENST00000556210 KRT32Q14532 448 aa17.47■□□□□ 0.39
CUX1-215ENST00000556210 INTS4Q96HW7 963 aaKnown RBP17.47■□□□□ 0.39
CUX1-215ENST00000556210 ZNF589Q86UQ0 364 aaPredicted RBP17.47■□□□□ 0.39
CUX1-215ENST00000556210 PI4K2BQ8TCG2 481 aa17.47■□□□□ 0.39
CUX1-215ENST00000556210 ACSBG1Q96GR2 724 aa17.47■□□□□ 0.39
CUX1-215ENST00000556210 TPCN1Q9ULQ1 816 aa17.47■□□□□ 0.39
CUX1-215ENST00000556210 ZHX1Q9UKY1 873 aaPredicted RBP17.47■□□□□ 0.39
CUX1-215ENST00000556210 ZC3H13Q5T200 1668 aaKnown RBP17.46■□□□□ 0.39
CUX1-215ENST00000556210 LUZP1Q86V48 1076 aa17.46■□□□□ 0.39
CUX1-215ENST00000556210 METTL22Q9BUU2 404 aaPredicted RBP17.46■□□□□ 0.39
CUX1-215ENST00000556210 LSG1Q9H089 658 aaKnown RBP17.46■□□□□ 0.39
CUX1-215ENST00000556210 SASH1O94885 1247 aa17.46■□□□□ 0.39
CUX1-215ENST00000556210 TNNI3KQ59H18 835 aa17.46■□□□□ 0.39
CUX1-215ENST00000556210 U3KPZ7 1027 aaPredicted RBP17.46■□□□□ 0.39
CUX1-215ENST00000556210 FPGT-TNNI3KV9GXZ4 949 aa17.46■□□□□ 0.39
CUX1-215ENST00000556210 AKAP17AQ02040 695 aaKnown RBP17.46■□□□□ 0.39
CUX1-215ENST00000556210 HSP90AA4PQ58FG1 418 aa17.46■□□□□ 0.39
CUX1-215ENST00000556210 TSC1Q92574 1164 aa17.46■□□□□ 0.39
CUX1-215ENST00000556210 COL3A1P02461 1466 aaPredicted RBP17.46■□□□□ 0.38
CUX1-215ENST00000556210 LETM1O95202 739 aaPredicted RBP17.45■□□□□ 0.38
CUX1-215ENST00000556210 TPD52L1Q16890 204 aaPredicted RBP17.45■□□□□ 0.38
CUX1-215ENST00000556210 MCMDC2Q4G0Z9 681 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 MICU3Q86XE3 530 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 KIF24Q5T7B8 1368 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 A0A087WWV3 80 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 CADPS2Q86UW7 1296 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 CCAR2Q8N163 923 aaKnown RBP17.45■□□□□ 0.38
CUX1-215ENST00000556210 STAP2Q9UGK3 403 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 CRB1P82279 1406 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 GOLGA8BA8MQT2 603 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 MED14O60244 1454 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 PAG1Q9NWQ8 432 aa17.45■□□□□ 0.38
CUX1-215ENST00000556210 NPHP3Q7Z494 1330 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 TTLL5Q6EMB2 1281 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 DCAF5Q96JK2 942 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 DNAJC25Q9H1X3 360 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 KIAA1210Q9ULL0 1709 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 IMMTQ16891 758 aaKnown RBP17.44■□□□□ 0.38
CUX1-215ENST00000556210 VPS53Q5VIR6 699 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 FAM177A1Q8N128 213 aaPredicted RBP17.44■□□□□ 0.38
CUX1-215ENST00000556210 SCAND2PQ9GZW5 306 aaPredicted RBP17.44■□□□□ 0.38
CUX1-215ENST00000556210 ATP10DQ9P241 1426 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 MINDY4BA8MYZ0 360 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 STARD3NLO95772 234 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 ZNF165P49910 485 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 PIP4K2BP78356 416 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 ANO6Q4KMQ2 910 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 LRRC24Q50LG9 513 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 HOMER1Q86YM7 354 aa17.44■□□□□ 0.38
CUX1-215ENST00000556210 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.44■□□□□ 0.38
CUX1-215ENST00000556210 C16orf45Q96MC5 204 aaPredicted RBP17.43■□□□□ 0.38
CUX1-215ENST00000556210 TRMT1Q9NXH9 659 aaKnown RBP17.43■□□□□ 0.38
CUX1-215ENST00000556210 DBNLQ9UJU6 430 aaKnown RBP17.43■□□□□ 0.38
CUX1-215ENST00000556210 PHKG2P15735 406 aa17.43■□□□□ 0.38
CUX1-215ENST00000556210 ZNF771Q7L3S4 317 aaPredicted RBP17.43■□□□□ 0.38
CUX1-215ENST00000556210 PPLO60437 1756 aa17.43■□□□□ 0.38
CUX1-215ENST00000556210 A0A1B0GUL7 405 aa17.43■□□□□ 0.38
CUX1-215ENST00000556210 RAD21O60216 631 aa17.43■□□□□ 0.38
CUX1-215ENST00000556210 TPM4P67936 248 aa17.43■□□□□ 0.38
CUX1-215ENST00000556210 AIDAQ96BJ3 306 aa17.43■□□□□ 0.38
CUX1-215ENST00000556210 PUS3Q9BZE2 481 aaKnown RBP17.43■□□□□ 0.38
CUX1-215ENST00000556210 CFAP45Q9UL16 551 aa17.43■□□□□ 0.38
CUX1-215ENST00000556210 CDK11BP21127 795 aaKnown RBP17.42■□□□□ 0.38
CUX1-215ENST00000556210 CLTCQ00610 1675 aaKnown RBP17.42■□□□□ 0.38
CUX1-215ENST00000556210 ZNF213O14771 459 aa17.42■□□□□ 0.38
CUX1-215ENST00000556210 IGKV5-2P06315 115 aa17.42■□□□□ 0.38
CUX1-215ENST00000556210 FSIP1Q8NA03 581 aa17.42■□□□□ 0.38
CUX1-215ENST00000556210 LRP2BPQ9P2M1 347 aa17.42■□□□□ 0.38
CUX1-215ENST00000556210 TDO2P48775 406 aa17.42■□□□□ 0.38
CUX1-215ENST00000556210 PDILTQ8N807 584 aa17.42■□□□□ 0.38
CUX1-215ENST00000556210 C8orf76Q96K31 380 aa17.42■□□□□ 0.38
CUX1-215ENST00000556210 KLF18A0A0U1RQI7 1052 aa17.41■□□□□ 0.38
CUX1-215ENST00000556210 ADAMTS13Q76LX8 1427 aa17.41■□□□□ 0.38
CUX1-215ENST00000556210 MAP2P11137 1827 aaKnown RBP17.41■□□□□ 0.38
CUX1-215ENST00000556210 ERICH2A1L162 156 aa17.41■□□□□ 0.38
CUX1-215ENST00000556210 NOLC1Q14978 699 aaKnown RBP eCLIP17.41■□□□□ 0.387e-6■■■□□ 16.5
CUX1-215ENST00000556210 PTPRUQ92729 1446 aa17.41■□□□□ 0.38
CUX1-215ENST00000556210 HOXB7P09629 217 aa17.4■□□□□ 0.38
CUX1-215ENST00000556210 MARCKSP29966 332 aaPredicted RBP17.4■□□□□ 0.38
CUX1-215ENST00000556210 CCAR1Q8IX12 1150 aaKnown RBP17.4■□□□□ 0.38
CUX1-215ENST00000556210 ZNF396Q96N95 335 aaPredicted RBP17.4■□□□□ 0.38
CUX1-215ENST00000556210 ORC3Q9UBD5 711 aaPredicted RBP17.4■□□□□ 0.38
CUX1-215ENST00000556210 LIG1P18858 919 aa17.4■□□□□ 0.38
CUX1-215ENST00000556210 DNAJC10Q8IXB1 793 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms