RNA–Protein interactions for RNA: ENST00000556067.1

ATL1-208, Transcript of atlastin GTPase 1, human

TSL 4

Gene ATL1, Length 550 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATL1-208	ENST00000556067	ABCC6	O95255	1503 aa		7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	FANCI	Q9NVI1	1328 aa		7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	TTC24	A2A3L6	582 aa	Predicted RBP	7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	F12	P00748	615 aa	Predicted RBP	7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	IRX6	P78412	446 aa	Predicted RBP	7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	RC3H1	Q5TC82	1133 aa	Known RBP	7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	ZNF530	Q6P9A1	599 aa	Predicted RBP	7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	CYP4X1	Q8N118	509 aa		7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	TSR2	Q969E8	191 aa	Known RBP	7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	ZNF428	Q96B54	188 aa		7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	CHMP4A	Q9BY43	222 aa		7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	STRN4	Q9NRL3	753 aa		7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	LTN1	O94822	1766 aa		7.12	□□□□□ -1.27
ATL1-208	ENST00000556067	MAP3K5	Q99683	1374 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	MARF1	Q9Y4F3	1742 aa	Known RBP	7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	FAM187A	A6NFU0	413 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	IPO8	O15397	1037 aa	Known RBP	7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	USP17L8	P0C7I0	530 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	WNT7B	P56706	349 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	SH3BP2	P78314	561 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	EXOSC9	Q06265	439 aa	Known RBP	7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	TEF	Q10587	303 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	AKAP4	Q5JQC9	854 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	MCM10	Q7L590	875 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	EHBP1	Q8NDI1	1231 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	MRGPRX2	Q96LB1	330 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	BABAM1	Q9NWV8	329 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	PPP4R2	Q9NY27	417 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	ROBO1	Q9Y6N7	1651 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	NHSL1	Q5SYE7	1610 aa		7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	PHRF1	Q9P1Y6	1649 aa	Known RBP	7.11	□□□□□ -1.27
ATL1-208	ENST00000556067	RNF123	Q5XPI4	1314 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	WDR17	Q8IZU2	1322 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	AHDC1	Q5TGY3	1603 aa	Predicted RBP	7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	FAM83G	A6ND36	823 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	WNT7A	O00755	349 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	HSP90AB1	P08238	724 aa	Known RBP	7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	PRR20E	P86478	221 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	PRR20C	P86479	221 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	PRR20D	P86480	221 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	PRR20B	P86481	221 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	PRR20A	P86496	221 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	DCTN1	Q14203	1278 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	AGER	Q15109	404 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	TAF7	Q15545	349 aa	Predicted RBP	7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	PKDCC	Q504Y2	493 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	ZNF511	Q8NB15	262 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	FRAT1	Q92837	279 aa	Predicted RBP	7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	THUMPD2	Q9BTF0	503 aa	Known RBP	7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	SMC4	Q9NTJ3	1288 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	TSPYL4	Q9UJ04	414 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	RGPD1	P0DJD0	1748 aa		7.1	□□□□□ -1.27
ATL1-208	ENST00000556067	PLEKHG2	Q9H7P9	1386 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	CHL1	O00533	1208 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	ADAMTS2	O95450	1211 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	ZNF853	P0CG23	659 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	RARS	P54136	660 aa	Known RBP	7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	NR6A1	Q15406	480 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	ALDH1L2	Q3SY69	923 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	IFNL2	Q8IZJ0	200 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	CARD10	Q9BWT7	1032 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	MBIP	Q9NS73	344 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	BTG4	Q9NY30	223 aa		7.09	□□□□□ -1.27
ATL1-208	ENST00000556067	IL2RB	P14784	551 aa		7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	PDE3A	Q14432	1141 aa		7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	TWISTNB	Q3B726	338 aa	Predicted RBP	7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	ZKSCAN2	Q63HK3	967 aa		7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	FTSJ3	Q8IY81	847 aa	Known RBP	7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	ZCRB1	Q8TBF4	217 aa	Known RBP	7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	FOXJ1	Q92949	421 aa		7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	HMX1	Q9NP08	348 aa	Predicted RBP	7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	NCAPD2	Q15021	1401 aa		7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	JCAD	Q9P266	1359 aa		7.08	□□□□□ -1.28
ATL1-208	ENST00000556067	PHLPP1	O60346	1717 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	SOS1	Q07889	1333 aa	Predicted RBP	7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	KIF16B	Q96L93	1317 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	BTBD11	A6QL63	1104 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	ELL2	O00472	640 aa	Predicted RBP	7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	PLIN1	O60240	522 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	BCAR3	O75815	825 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	TMEM259	Q4ZIN3	620 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	MEX3C	Q5U5Q3	659 aa	Known RBP	7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	MPRIP	Q6WCQ1	1025 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	ARMC2	Q8NEN0	867 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	IL17RE	Q8NFR9	667 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	SNIP1	Q8TAD8	396 aa	Known RBP	7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	EPS8L1	Q8TE68	723 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	CCDC136	Q96JN2	1154 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	CDCA7	Q9BWT1	371 aa	Predicted RBP	7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	STK31	Q9BXU1	1019 aa		7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	CHMP4B	Q9H444	224 aa	Known RBP	7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	CCDC9	Q9Y3X0	531 aa	Known RBP	7.07	□□□□□ -1.28
ATL1-208	ENST00000556067	FAM208A	Q9UK61	1670 aa	Known RBP	7.06	□□□□□ -1.28
ATL1-208	ENST00000556067	PCDH11X	Q9BZA7	1347 aa		7.06	□□□□□ -1.28
ATL1-208	ENST00000556067	PCDH11Y	Q9BZA8	1340 aa		7.06	□□□□□ -1.28
ATL1-208	ENST00000556067		J3QL48	77 aa		7.06	□□□□□ -1.28
ATL1-208	ENST00000556067	RNMT	O43148	476 aa	Known RBP	7.06	□□□□□ -1.28
ATL1-208	ENST00000556067	VAMP4	O75379	141 aa		7.06	□□□□□ -1.28
ATL1-208	ENST00000556067	ALDH1A1	P00352	501 aa		7.06	□□□□□ -1.28
ATL1-208	ENST00000556067	PHKG2	P15735	406 aa		7.06	□□□□□ -1.28

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms