RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 USP28Q96RU2 1077 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 EYA1Q99502 592 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 DDX19AQ9NUU7 478 aaKnown RBP10.41□□□□□ -0.74
SYNE2-217ENST00000555022 STAP2Q9UGK3 403 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 ADGRB3O60242 1522 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 KARSQ15046 597 aaKnown RBP10.4□□□□□ -0.74
SYNE2-217ENST00000555022 VPS53Q5VIR6 699 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 SMARCE1Q969G3 411 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 RSPH14Q9UHP6 348 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 ZFYVE9O95405 1425 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 KIAA0232Q92628 1395 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 NPHP3Q7Z494 1330 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 PNMA6AP0CW24 399 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-217ENST00000555022 RAD51AP2Q09MP3 1159 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 WWC2Q6AWC2 1192 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 DDX46Q7L014 1031 aaKnown RBP10.4□□□□□ -0.74
SYNE2-217ENST00000555022 CCDC191Q8NCU4 936 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 HINFPQ9BQA5 517 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 SCAND2PQ9GZW5 306 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-217ENST00000555022 PPP6R1Q9UPN7 881 aa10.4□□□□□ -0.74
SYNE2-217ENST00000555022 ZC3H13Q5T200 1668 aaKnown RBP10.4□□□□□ -0.74
SYNE2-217ENST00000555022 GLRX3O76003 335 aaKnown RBP10.4□□□□□ -0.75
SYNE2-217ENST00000555022 PROSER3Q2NL68 480 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 TMCO3Q6UWJ1 677 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 CREBRFQ8IUR6 639 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 ERO1AQ96HE7 468 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 PPP1R13BQ96KQ4 1090 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 ZSWIM6Q9HCJ5 1215 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 ECHDC1Q9NTX5 307 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 CCDC61Q9Y6R9 512 aa10.4□□□□□ -0.75
SYNE2-217ENST00000555022 UHRF1BP1LA0JNW5 1464 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 NRXN1Q9ULB1 1477 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 SFPQP23246 707 aaKnown RBP eCLIP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 MARCKSP29966 332 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 TOB2Q14106 344 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 DESI2Q9BSY9 194 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 LGR6Q9HBX8 967 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 PRR36Q9H6K5 1346 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 OAS2P29728 719 aaKnown RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 PLA2G4AP47712 749 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 E4F1Q66K89 784 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 LMOD2Q6P5Q4 547 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 NGDNQ8NEJ9 315 aaKnown RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 SLC26A8Q96RN1 970 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 UTP14AQ9BVJ6 771 aaKnown RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 SH2B1Q9NRF2 756 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 CALCOCO1Q9P1Z2 691 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 MAP2P11137 1827 aaKnown RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 DEPDC5O75140 1603 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 ACEP12821 1306 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 IBSPP21815 317 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 HAND2P61296 217 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 MCM6Q14566 821 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 IQCB1Q15051 598 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 STX1AQ16623 288 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 MPRIPQ6WCQ1 1025 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 IL17REQ8NFR9 667 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 SSH3Q8TE77 659 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 EAF2Q96CJ1 260 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 ZSCAN31Q96LW9 406 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-217ENST00000555022 CPS1P31327 1500 aa10.39□□□□□ -0.75
SYNE2-217ENST00000555022 MYO3AQ8NEV4 1616 aa10.38□□□□□ -0.75
SYNE2-217ENST00000555022 MYL6BP14649 208 aa10.38□□□□□ -0.75
SYNE2-217ENST00000555022 ARMCX5Q6P1M9 558 aa10.38□□□□□ -0.75
SYNE2-217ENST00000555022 CEP57L1Q8IYX8 460 aa10.38□□□□□ -0.75
SYNE2-217ENST00000555022 IPO4Q8TEX9 1081 aaKnown RBP10.38□□□□□ -0.75
SYNE2-217ENST00000555022 SRRTQ9BXP5 876 aaKnown RBP10.38□□□□□ -0.75
SYNE2-217ENST00000555022 EVCP57679 992 aa10.38□□□□□ -0.75
SYNE2-217ENST00000555022 BMS1Q14692 1282 aaKnown RBP10.38□□□□□ -0.75
SYNE2-217ENST00000555022 PUF60Q9UHX1 559 aaKnown RBP10.38□□□□□ -0.75
SYNE2-217ENST00000555022 FHOD1Q9Y613 1164 aa10.38□□□□□ -0.75
SYNE2-217ENST00000555022 KIAA1210Q9ULL0 1709 aa10.38□□□□□ -0.75
SYNE2-217ENST00000555022 MROH1Q8NDA8 1641 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 ATP2B1P20020 1258 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 PDCP20941 246 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 SPECC1Q5M775 1068 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 DHX40Q8IX18 779 aaKnown RBP10.37□□□□□ -0.75
SYNE2-217ENST00000555022 IRX2Q9BZI1 471 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-217ENST00000555022 HTATSF1O43719 755 aaKnown RBP10.37□□□□□ -0.75
SYNE2-217ENST00000555022 RXRAP19793 462 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 RPS6KB1P23443 525 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 NLRP6P59044 892 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 CFAP100Q494V2 611 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 TAF3Q5VWG9 929 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 CPLX3Q8WVH0 158 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 DNAAF4Q8WXU2 420 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 DPF2Q92785 391 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 MAP3K2Q9Y2U5 619 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.37□□□□□ -0.75
SYNE2-217ENST00000555022 TMEM232C9JQI7 657 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 COBLO75128 1261 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 SERPINC1P01008 464 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 G3BP1Q13283 466 aaKnown RBP eCLIP10.37□□□□□ -0.75
SYNE2-217ENST00000555022 NECTIN1Q15223 517 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 DHX37Q8IY37 1157 aaKnown RBP10.37□□□□□ -0.75
SYNE2-217ENST00000555022 GPATCH3Q96I76 525 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 GDAP1L1Q96MZ0 367 aa10.37□□□□□ -0.75
SYNE2-217ENST00000555022 ARHGEF28Q8N1W1 1705 aaKnown RBP10.36□□□□□ -0.75
SYNE2-217ENST00000555022 PTPRMP28827 1452 aa10.36□□□□□ -0.75
SYNE2-217ENST00000555022 LONRF3Q496Y0 759 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms