RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 CSF1RP07333 972 aa18.02■□□□□ 0.48
SHMT2-210ENST00000553950 POLD1P28340 1107 aa18.02■□□□□ 0.48
SHMT2-210ENST00000553950 POLA2Q14181 598 aa18.02■□□□□ 0.48
SHMT2-210ENST00000553950 CCDC57Q2TAC2 916 aa18.02■□□□□ 0.48
SHMT2-210ENST00000553950 MSL1Q68DK7 614 aa18.02■□□□□ 0.48
SHMT2-210ENST00000553950 COL11A2P13942 1736 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-210ENST00000553950 IFIT5Q13325 482 aaKnown RBP18.01■□□□□ 0.47
SHMT2-210ENST00000553950 JARID2Q92833 1246 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-210ENST00000553950 FBXO3Q9UK99 471 aa18.01■□□□□ 0.47
SHMT2-210ENST00000553950 KDM2BQ8NHM5 1336 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 C10orf71Q711Q0 1435 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 PNMA6EA0A0J9YXQ4 647 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 ANKRD18BA2A2Z9 1011 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 HCLS1P14317 486 aaPredicted RBP18■□□□□ 0.47
SHMT2-210ENST00000553950 SF3B3Q15393 1217 aaKnown RBP18■□□□□ 0.47
SHMT2-210ENST00000553950 TAF7LQ5H9L4 462 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 EPHA10Q5JZY3 1008 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 B4GALNT3Q6L9W6 998 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 ERC1Q8IUD2 1116 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 TTLL11Q8NHH1 800 aa18■□□□□ 0.47
SHMT2-210ENST00000553950 CDC5LQ99459 802 aaKnown RBP18■□□□□ 0.47
SHMT2-210ENST00000553950 ZBTB47Q9UFB7 747 aaPredicted RBP18■□□□□ 0.47
SHMT2-210ENST00000553950 PDE6BP35913 854 aa17.99■□□□□ 0.47
SHMT2-210ENST00000553950 FAM161AQ3B820 660 aa17.99■□□□□ 0.47
SHMT2-210ENST00000553950 SIRT2Q8IXJ6 389 aa17.99■□□□□ 0.47
SHMT2-210ENST00000553950 BRIP1Q9BX63 1249 aa17.99■□□□□ 0.47
SHMT2-210ENST00000553950 A0A1B0GUL6 1792 aa17.99■□□□□ 0.47
SHMT2-210ENST00000553950 RAB11FIP3O75154 756 aa17.98■□□□□ 0.47
SHMT2-210ENST00000553950 SMC5Q8IY18 1101 aa17.98■□□□□ 0.47
SHMT2-210ENST00000553950 DCTPP1Q9H773 170 aa17.98■□□□□ 0.47
SHMT2-210ENST00000553950 COPRSQ9NQ92 184 aa17.98■□□□□ 0.47
SHMT2-210ENST00000553950 CACNA1SQ13698 1873 aa17.97■□□□□ 0.47
SHMT2-210ENST00000553950 ITGA6P23229 1130 aa17.97■□□□□ 0.47
SHMT2-210ENST00000553950 SYNE4Q8N205 404 aa17.97■□□□□ 0.47
SHMT2-210ENST00000553950 RPGRQ92834 1020 aaKnown RBP17.97■□□□□ 0.47
SHMT2-210ENST00000553950 NOP58Q9Y2X3 529 aaKnown RBP17.97■□□□□ 0.47
SHMT2-210ENST00000553950 LRRC37AA6NMS7 1700 aa17.96■□□□□ 0.47
SHMT2-210ENST00000553950 CIAO1O76071 339 aa17.96■□□□□ 0.47
SHMT2-210ENST00000553950 IGHMBP2P38935 993 aaKnown RBP17.96■□□□□ 0.47
SHMT2-210ENST00000553950 OS9Q13438 667 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-210ENST00000553950 CRY2Q49AN0 593 aa17.96■□□□□ 0.47
SHMT2-210ENST00000553950 DDX46Q7L014 1031 aaKnown RBP17.96■□□□□ 0.47
SHMT2-210ENST00000553950 GREM2Q9H772 168 aa17.96■□□□□ 0.47
SHMT2-210ENST00000553950 SURF6O75683 361 aaKnown RBP17.95■□□□□ 0.46
SHMT2-210ENST00000553950 ZBTB7AO95365 584 aa17.95■□□□□ 0.46
SHMT2-210ENST00000553950 IGHDP01880 384 aa17.95■□□□□ 0.46
SHMT2-210ENST00000553950 G3BP1Q13283 466 aaKnown RBP eCLIP17.95■□□□□ 0.468e-8■■■□□ 16.6
SHMT2-210ENST00000553950 PDGFDQ9GZP0 370 aaPredicted RBP17.95■□□□□ 0.46
SHMT2-210ENST00000553950 KLRG2A4D1S0 409 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-210ENST00000553950 PSDA5PKW4 1024 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-210ENST00000553950 RFX5P48382 616 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-210ENST00000553950 PTPN12Q05209 780 aaKnown RBP17.94■□□□□ 0.46
SHMT2-210ENST00000553950 KIF1BPQ96EK5 621 aa17.94■□□□□ 0.46
SHMT2-210ENST00000553950 RBM17Q96I25 401 aaKnown RBP17.94■□□□□ 0.46
SHMT2-210ENST00000553950 ARAP2Q8WZ64 1704 aa17.94■□□□□ 0.46
SHMT2-210ENST00000553950 IL15P40933 162 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-210ENST00000553950 TMC4Q7Z404 712 aa17.93■□□□□ 0.46
SHMT2-210ENST00000553950 ANKRD18AQ8IVF6 992 aa17.93■□□□□ 0.46
SHMT2-210ENST00000553950 MPHOSPH8Q99549 860 aa17.93■□□□□ 0.46
SHMT2-210ENST00000553950 LRRCC1Q9C099 1032 aa17.93■□□□□ 0.46
SHMT2-210ENST00000553950 TAF1P21675 1872 aa17.92■□□□□ 0.46
SHMT2-210ENST00000553950 KIAA1551Q9HCM1 1747 aa17.92■□□□□ 0.46
SHMT2-210ENST00000553950 EYA2O00167 538 aa17.92■□□□□ 0.46
SHMT2-210ENST00000553950 NPR1P16066 1061 aa17.92■□□□□ 0.46
SHMT2-210ENST00000553950 SPON1Q9HCB6 807 aa17.92■□□□□ 0.46
SHMT2-210ENST00000553950 EXOC6BQ9Y2D4 811 aa17.92■□□□□ 0.46
SHMT2-210ENST00000553950 BRCA1P38398 1863 aaKnown RBP17.91■□□□□ 0.46
SHMT2-210ENST00000553950 HOXA10P31260 410 aaPredicted RBP17.91■□□□□ 0.46
SHMT2-210ENST00000553950 GRAPQ13588 217 aa17.91■□□□□ 0.46
SHMT2-210ENST00000553950 GRAPLQ8TC17 118 aaPredicted RBP17.91■□□□□ 0.46
SHMT2-210ENST00000553950 CCDC85AQ96PX6 553 aaPredicted RBP17.91■□□□□ 0.46
SHMT2-210ENST00000553950 CRAMP1Q96RY5 1269 aa17.91■□□□□ 0.46
SHMT2-210ENST00000553950 CNNM1Q9NRU3 951 aa17.91■□□□□ 0.46
SHMT2-210ENST00000553950 H0YIN7 160 aa17.9■□□□□ 0.46
SHMT2-210ENST00000553950 NUCB1Q02818 461 aa17.9■□□□□ 0.46
SHMT2-210ENST00000553950 STYK1Q6J9G0 422 aa17.9■□□□□ 0.46
SHMT2-210ENST00000553950 LDHAL6AQ6ZMR3 332 aa17.9■□□□□ 0.46
SHMT2-210ENST00000553950 MASTLQ96GX5 879 aa17.9■□□□□ 0.46
SHMT2-210ENST00000553950 SIL1Q9H173 461 aa17.9■□□□□ 0.46
SHMT2-210ENST00000553950 PA2G4Q9UQ80 394 aaKnown RBP17.9■□□□□ 0.46
SHMT2-210ENST00000553950 MROH5Q6ZUA9 1318 aa17.9■□□□□ 0.46
SHMT2-210ENST00000553950 SRGNP10124 158 aa17.89■□□□□ 0.45
SHMT2-210ENST00000553950 ALDH1B1P30837 517 aa17.89■□□□□ 0.45
SHMT2-210ENST00000553950 C3orf67Q6ZVT6 689 aa17.89■□□□□ 0.45
SHMT2-210ENST00000553950 CCDC24Q8N4L8 307 aa17.89■□□□□ 0.45
SHMT2-210ENST00000553950 ATF5Q9Y2D1 282 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-210ENST00000553950 ANKRD45Q5TZF3 282 aa17.88■□□□□ 0.45
SHMT2-210ENST00000553950 CHD1LQ86WJ1 897 aa17.88■□□□□ 0.45
SHMT2-210ENST00000553950 C2CD5Q86YS7 1000 aa17.88■□□□□ 0.45
SHMT2-210ENST00000553950 CLASRPQ8N2M8 674 aaKnown RBP17.88■□□□□ 0.45
SHMT2-210ENST00000553950 RHPN1Q8TCX5 695 aa17.88■□□□□ 0.45
SHMT2-210ENST00000553950 SGIP1Q9BQI5 828 aa17.88■□□□□ 0.45
SHMT2-210ENST00000553950 BSDC1Q9NW68 430 aaPredicted RBP17.88■□□□□ 0.45
SHMT2-210ENST00000553950 ZNF609O15014 1411 aa17.88■□□□□ 0.45
SHMT2-210ENST00000553950 BBOX1O75936 387 aa17.87■□□□□ 0.45
SHMT2-210ENST00000553950 TGFB2P61812 414 aa17.87■□□□□ 0.45
SHMT2-210ENST00000553950 RPS8P62241 208 aaKnown RBP17.87■□□□□ 0.45
SHMT2-210ENST00000553950 KLHDC4Q8TBB5 520 aa17.87■□□□□ 0.45
SHMT2-210ENST00000553950 CNKSR1Q969H4 720 aa17.87■□□□□ 0.45
SHMT2-210ENST00000553950 TMX4Q9H1E5 349 aaPredicted RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms