RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 DIP2AQ14689 1571 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 RIOK3O14730 519 aaKnown RBP6.46□□□□□ -1.37
LIMA1-212ENST00000552491 OS9Q13438 667 aaPredicted RBP6.46□□□□□ -1.37
LIMA1-212ENST00000552491 PROSER3Q2NL68 480 aa6.46□□□□□ -1.37
LIMA1-212ENST00000552491 CREB3L3Q68CJ9 461 aa6.46□□□□□ -1.37
LIMA1-212ENST00000552491 LUZP1Q86V48 1076 aa6.46□□□□□ -1.37
LIMA1-212ENST00000552491 TM6SF1Q9BZW5 370 aa6.46□□□□□ -1.37
LIMA1-212ENST00000552491 RBM8AQ9Y5S9 174 aaKnown RBP6.46□□□□□ -1.37
LIMA1-212ENST00000552491 CYP46A1Q9Y6A2 500 aa6.46□□□□□ -1.37
LIMA1-212ENST00000552491 MRVI1Q9Y6F6 885 aa6.46□□□□□ -1.37
LIMA1-212ENST00000552491 CCDC171Q6TFL3 1326 aa6.46□□□□□ -1.37
LIMA1-212ENST00000552491 MED1Q15648 1581 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 PRAMEF22A3QJZ6 481 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 ZSCAN20P17040 1043 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 PTGS1P23219 599 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 CEBPAP49715 358 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 NMIQ13287 307 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 CWF19L2Q2TBE0 894 aaKnown RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 ILDR1Q86SU0 546 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 CKAP2LQ8IYA6 745 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 KAZALD1Q96I82 304 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 ECHDC1Q9NTX5 307 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 TLR7Q9NYK1 1049 aaKnown RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 TFIP11Q9UBB9 837 aaKnown RBP6.46□□□□□ -1.38
LIMA1-212ENST00000552491 NRBP1Q9UHY1 535 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 KIF3AQ9Y496 699 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 KDM3BQ7LBC6 1761 aa6.46□□□□□ -1.38
LIMA1-212ENST00000552491 SASH1O94885 1247 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 CBX1P83916 185 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 TYRO3Q06418 890 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 LRMPQ12912 555 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 MTX1Q13505 466 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 VARS2Q5ST30 1063 aaKnown RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 NBPF6Q5VWK0 638 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 LARP1BQ659C4 914 aaKnown RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 CLASRPQ8N2M8 674 aaKnown RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 MAP4K1Q92918 833 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 EAF2Q96CJ1 260 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 NBPF4Q96M43 638 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 SH2B1Q9NRF2 756 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 CHD2O14647 1828 aaKnown RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 RGPD2P0DJD1 1756 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 A0A0D9SFI3 127 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 SLC27A2O14975 620 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 CCDC192P0DO97 292 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 PPP4R3BQ5MIZ7 849 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 LARP1Q6PKG0 1096 aaKnown RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 AACSQ86V21 672 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 ABTB2Q8N961 1025 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 ZSCAN31Q96LW9 406 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 CCDC8Q9H0W5 538 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 DACT1Q9NYF0 836 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 ZHX1Q9UKY1 873 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 MAP3K2Q9Y2U5 619 aa6.45□□□□□ -1.38
LIMA1-212ENST00000552491 NPHP4O75161 1426 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-212ENST00000552491 CHGBP05060 677 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 TOB2Q14106 344 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-212ENST00000552491 HSP90AB4PQ58FF6 505 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 ZNF589Q86UQ0 364 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-212ENST00000552491 FAM200AQ8TCP9 573 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 RUFY2Q8WXA3 655 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 EDC3Q96F86 508 aaKnown RBP6.44□□□□□ -1.38
LIMA1-212ENST00000552491 NUP62CLQ9H1M0 184 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 CBX8Q9HC52 389 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 BOLA1Q9Y3E2 137 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 LTN1O94822 1766 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 TPM3P06753 285 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 IFIT2P09913 472 aaKnown RBP6.44□□□□□ -1.38
LIMA1-212ENST00000552491 KRT85P78386 507 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 MAP3K11Q16584 847 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 ANO6Q4KMQ2 910 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 MPRIPQ6WCQ1 1025 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 CCDC186Q7Z3E2 898 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 KLHDC4Q8TBB5 520 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 LRRC59Q96AG4 307 aaKnown RBP6.44□□□□□ -1.38
LIMA1-212ENST00000552491 EVI5LQ96CN4 794 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 SUCLG2Q96I99 432 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 PGBD1Q96JS3 809 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 BOLA2Q9H3K6 86 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 COL15A1P39059 1388 aa6.44□□□□□ -1.38
LIMA1-212ENST00000552491 ELP1O95163 1332 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 CTIFO43310 598 aaKnown RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 JAK2O60674 1132 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 NR1I2O75469 434 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 PDIA4P13667 645 aaKnown RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 U2AF2P26368 475 aaKnown RBP eCLIP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 STK3Q13188 491 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 LEO1Q8WVC0 666 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 ANKRD7Q92527 254 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 SNRKQ9NRH2 765 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 C9orf78Q9NZ63 289 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 BTBD11A6QL63 1104 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 HOXB7P09629 217 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 ZKSCAN1P17029 563 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 RPS6KB1P23443 525 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 KCNJ4P48050 445 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 DMTNQ08495 405 aa6.43□□□□□ -1.38
LIMA1-212ENST00000552491 NAA30Q147X3 362 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 RBM43Q6ZSC3 357 aaKnown RBP6.43□□□□□ -1.38
LIMA1-212ENST00000552491 DDX11Q96FC9 970 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms