RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 SHKBP1Q8TBC3 707 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 DCAF11Q8TEB1 546 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 UTP4Q969X6 686 aaKnown RBP4.5□□□□□ -1.69
LIMA1-209ENST00000552008 SMG9Q9H0W8 520 aaKnown RBP4.5□□□□□ -1.69
LIMA1-209ENST00000552008 GOPCQ9HD26 462 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 CHMP3Q9Y3E7 222 aa4.5□□□□□ -1.69
LIMA1-209ENST00000552008 ZBTB42B2RXF5 422 aa4.49□□□□□ -1.69
LIMA1-209ENST00000552008 MAP3K6O95382 1288 aa4.49□□□□□ -1.69
LIMA1-209ENST00000552008 HIRAP54198 1017 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-209ENST00000552008 PSMA6P60900 246 aaKnown RBP4.49□□□□□ -1.69
LIMA1-209ENST00000552008 MLLT1Q03111 559 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-209ENST00000552008 PSME1Q06323 249 aa4.49□□□□□ -1.69
LIMA1-209ENST00000552008 ZNF124Q15973 351 aa4.49□□□□□ -1.69
LIMA1-209ENST00000552008 ZNF648Q5T619 568 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-209ENST00000552008 TRPM4Q8TD43 1214 aa4.49□□□□□ -1.69
LIMA1-209ENST00000552008 CEP41Q9BYV8 373 aa4.49□□□□□ -1.69
LIMA1-209ENST00000552008 SRA1Q9HD15 236 aaKnown RBP4.49□□□□□ -1.69
LIMA1-209ENST00000552008 HOXA10P31260 410 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-209ENST00000552008 UVSSAQ2YD98 709 aa4.48□□□□□ -1.69
LIMA1-209ENST00000552008 DHX32Q7L7V1 743 aaKnown RBP4.48□□□□□ -1.69
LIMA1-209ENST00000552008 C14orf37Q86TY3 774 aa4.48□□□□□ -1.69
LIMA1-209ENST00000552008 MAP4K3Q8IVH8 894 aa4.48□□□□□ -1.69
LIMA1-209ENST00000552008 GTF2IP78347 998 aa4.47□□□□□ -1.69
LIMA1-209ENST00000552008 GPLD1P80108 840 aa4.47□□□□□ -1.69
LIMA1-209ENST00000552008 SETDB1Q15047 1291 aa4.47□□□□□ -1.69
LIMA1-209ENST00000552008 SNRKQ9NRH2 765 aa4.47□□□□□ -1.69
LIMA1-209ENST00000552008 EIF2AK2P19525 551 aaKnown RBP4.46□□□□□ -1.7
LIMA1-209ENST00000552008 HIF1AQ16665 826 aa4.46□□□□□ -1.7
LIMA1-209ENST00000552008 EML3Q32P44 896 aa4.46□□□□□ -1.7
LIMA1-209ENST00000552008 POTEAQ6S8J7 498 aa4.46□□□□□ -1.7
LIMA1-209ENST00000552008 IL22RA1Q8N6P7 574 aa4.46□□□□□ -1.7
LIMA1-209ENST00000552008 FAM46AQ96IP4 442 aaKnown RBP4.46□□□□□ -1.7
LIMA1-209ENST00000552008 MYRFLQ96LU7 910 aa4.46□□□□□ -1.7
LIMA1-209ENST00000552008 ZFATQ9P243 1243 aa4.46□□□□□ -1.7
LIMA1-209ENST00000552008 NOD1Q9Y239 953 aa4.46□□□□□ -1.7
LIMA1-209ENST00000552008 WDR64B1ANS9 1081 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 GDF6Q6KF10 455 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-209ENST00000552008 HFE2Q6ZVN8 426 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 ACAD11Q709F0 780 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 KRT25Q7Z3Z0 450 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 CLEC10AQ8IUN9 316 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 TP53INP2Q8IXH6 220 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 FBXL18Q96ME1 805 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 FAM83CQ9BQN1 747 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 TSPAN10Q9H1Z9 355 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-209ENST00000552008 PIM2Q9P1W9 311 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 CCDC39Q9UFE4 941 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 TBC1D2BQ9UPU7 963 aa4.45□□□□□ -1.7
LIMA1-209ENST00000552008 WISP1O95388 367 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 ZNF865P0CJ78 1059 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-209ENST00000552008 EPB42P16452 691 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 VAC14Q08AM6 782 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 IRF5Q13568 498 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 IER5Q5VY09 327 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 VSIG10LQ86VR7 867 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 ALDH16A1Q8IZ83 802 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 PLD4Q96BZ4 506 aa4.44□□□□□ -1.7
LIMA1-209ENST00000552008 RARAP10276 462 aa4.43□□□□□ -1.7
LIMA1-209ENST00000552008 ARID4AP29374 1257 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-209ENST00000552008 PKN1Q16512 942 aa4.43□□□□□ -1.7
LIMA1-209ENST00000552008 MSMPQ1L6U9 139 aa4.43□□□□□ -1.7
LIMA1-209ENST00000552008 FAM20CQ8IXL6 584 aa4.43□□□□□ -1.7
LIMA1-209ENST00000552008 KCNF1Q9H3M0 494 aa4.43□□□□□ -1.7
LIMA1-209ENST00000552008 TIMELESSQ9UNS1 1208 aa4.43□□□□□ -1.7
LIMA1-209ENST00000552008 PRNPP04156 253 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 TARSP26639 723 aaKnown RBP4.42□□□□□ -1.7
LIMA1-209ENST00000552008 GRNP28799 593 aaKnown RBP4.42□□□□□ -1.7
LIMA1-209ENST00000552008 NRLP54845 237 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 COL19A1Q14993 1142 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 NFXL1Q6ZNB6 911 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 BEND4Q6ZU67 534 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 IFT43Q96FT9 208 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 MFSD14AQ96MC6 490 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 LEMD3Q9Y2U8 911 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 NCANO14594 1321 aa4.42□□□□□ -1.7
LIMA1-209ENST00000552008 TGFBR3LH3BV60 316 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 PIK3CDO00329 1044 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 PRRG2O14669 202 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 PPP1R12BO60237 982 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-209ENST00000552008 FARP2O94887 1054 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-209ENST00000552008 PAPLNO95428 1278 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 BMP3P12645 472 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 FOSL1P15407 271 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 SEMA3FQ13275 785 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 GALNT11Q8NCW6 608 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 GIMAP7Q8NHV1 300 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 MUC3BQ9H195 1237 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 PRM3Q9NNZ6 103 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 ATG3Q9NT62 314 aa4.41□□□□□ -1.7
LIMA1-209ENST00000552008 DMGDHQ9UI17 866 aaKnown RBP4.41□□□□□ -1.7
LIMA1-209ENST00000552008 J3QW42 95 aa4.4□□□□□ -1.71
LIMA1-209ENST00000552008 LZTS3O60299 673 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-209ENST00000552008 SASH3O75995 380 aa4.4□□□□□ -1.71
LIMA1-209ENST00000552008 SKIP12755 728 aa4.4□□□□□ -1.71
LIMA1-209ENST00000552008 CD68P34810 354 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-209ENST00000552008 LILRA6Q6PI73 481 aa4.4□□□□□ -1.71
LIMA1-209ENST00000552008 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-209ENST00000552008 NGLY1Q96IV0 654 aa4.4□□□□□ -1.71
LIMA1-209ENST00000552008 KRTAP9-8Q9BYQ0 159 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms