RNA–Protein interactions for RNA: ENST00000551338.1

RAB5C-208, Transcript of RAB5C, member RAS oncogene family, human

TSL 2

Gene RAB5C, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5C-208	ENST00000551338	CSF1R	P07333	972 aa		13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	HSP90AA1	P07900	732 aa	Known RBP	13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	GPT	P24298	496 aa		13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	ITPK1	Q13572	414 aa		13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	RAB3GAP1	Q15042	981 aa		13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	LRRC24	Q50LG9	513 aa		13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	INTS5	Q6P9B9	1019 aa	Known RBP	13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	DZIP3	Q86Y13	1208 aa	Known RBP	13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	FAM89A	Q96GI7	184 aa		13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	PUS3	Q9BZE2	481 aa	Known RBP	13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	CCDC87	Q9NVE4	849 aa		13.94	□□□□□ -0.18
RAB5C-208	ENST00000551338	CCDC171	Q6TFL3	1326 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	UBN2	Q6ZU65	1347 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	COL24A1	Q17RW2	1714 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338		A0A0D9SFI3	127 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338		A0A0G2JS52	829 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	MCM4	P33991	863 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	NEK4	P51957	841 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	EIF5	P55010	431 aa	Known RBP	13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	PTH1R	Q03431	593 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	EDC3	Q96F86	508 aa	Known RBP	13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	FAM227B	Q96M60	508 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	C8orf37	Q96NL8	207 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	FSD1	Q9BTV5	496 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	SNX14	Q9Y5W7	946 aa		13.93	□□□□□ -0.18
RAB5C-208	ENST00000551338	LOC102724428	A0A0B4J2F2	783 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	ATP6V1A	P38606	617 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	CRKL	P46109	303 aa	Known RBP	13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	SIK1	P57059	783 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	FAM98C	Q17RN3	349 aa	Known RBP	13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	KIAA1211	Q6ZU35	1233 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	ZNF34	Q8IZ26	560 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	SYNE4	Q8N205	404 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	KCNB2	Q92953	911 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	ARX	Q96QS3	562 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	HAUS7	Q99871	368 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	FBXO3	Q9UK99	471 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	TBC1D2B	Q9UPU7	963 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	DOCK2	Q92608	1830 aa		13.92	□□□□□ -0.18
RAB5C-208	ENST00000551338	C4A	P0C0L4	1744 aa		13.91	□□□□□ -0.18
RAB5C-208	ENST00000551338	C4B	P0C0L5	1744 aa		13.91	□□□□□ -0.18
RAB5C-208	ENST00000551338	MCM2	P49736	904 aa		13.91	□□□□□ -0.18
RAB5C-208	ENST00000551338	RASEF	Q8IZ41	740 aa		13.91	□□□□□ -0.18
RAB5C-208	ENST00000551338	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.91	□□□□□ -0.18
RAB5C-208	ENST00000551338	SMARCC1	Q92922	1105 aa	Predicted RBP	13.91	□□□□□ -0.18
RAB5C-208	ENST00000551338	TNPO1	Q92973	898 aa	Known RBP	13.91	□□□□□ -0.18
RAB5C-208	ENST00000551338	SPATA31A6	Q5VVP1	1343 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	KCNQ2	O43526	872 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	CAMTA2	O94983	1202 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	SSFA2	P28290	1259 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	CTSW	P56202	376 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	CUL4A	Q13619	759 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	CCDC57	Q2TAC2	916 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	ZGPAT	Q8N5A5	531 aa	Known RBP	13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	NGLY1	Q96IV0	654 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	TMX3	Q96JJ7	454 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	TTC14	Q96N46	770 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	UPF3B	Q9BZI7	483 aa	Known RBP	13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338	NDUFB9	Q9Y6M9	179 aa		13.9	□□□□□ -0.18
RAB5C-208	ENST00000551338		A0A1B0GUL7	405 aa		13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	CYP2E1	P05181	493 aa	Predicted RBP	13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	NECTIN1	Q15223	517 aa		13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	IL27	Q8NEV9	243 aa		13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	TTLL11	Q8NHH1	800 aa		13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	RBM8A	Q9Y5S9	174 aa	Known RBP	13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	TAF1	P21675	1872 aa		13.89	□□□□□ -0.19
RAB5C-208	ENST00000551338	IRS4	O14654	1257 aa	Predicted RBP	13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	PDE8A	O60658	829 aa		13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	TIMM10	P62072	90 aa		13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	IFIT5	Q13325	482 aa	Known RBP	13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	MAP4K1	Q92918	833 aa		13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	NEUROD6	Q96NK8	337 aa		13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	DNAJC2	Q99543	621 aa	Known RBP	13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	GREM2	Q9H772	168 aa		13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	CEP126	Q9P2H0	1117 aa		13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	TRMT112	Q9UI30	125 aa	Known RBP	13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	COL4A1	P02462	1669 aa		13.88	□□□□□ -0.19
RAB5C-208	ENST00000551338	BRWD3	Q6RI45	1802 aa		13.87	□□□□□ -0.19
RAB5C-208	ENST00000551338	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.87	□□□□□ -0.19
RAB5C-208	ENST00000551338	GSE1	Q14687	1217 aa		13.87	□□□□□ -0.19
RAB5C-208	ENST00000551338	PRPF40B	Q6NWY9	871 aa	Known RBP	13.87	□□□□□ -0.19
RAB5C-208	ENST00000551338	KBTBD3	Q8NAB2	608 aa		13.87	□□□□□ -0.19
RAB5C-208	ENST00000551338	CWC22	Q9HCG8	908 aa	Known RBP	13.87	□□□□□ -0.19
RAB5C-208	ENST00000551338	SH3TC1	Q8TE82	1336 aa		13.87	□□□□□ -0.19
RAB5C-208	ENST00000551338	ABCC12	Q96J65	1359 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	DDX11L8	A8MPP1	907 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	SLC27A2	O14975	620 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	ITGA6	P23229	1130 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	ADORA1	P30542	326 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	TAF7L	Q5H9L4	462 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	SUSD4	Q5VX71	490 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	CREB3L3	Q68CJ9	461 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	CLEC17A	Q6ZS10	378 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	NOL8	Q76FK4	1167 aa	Known RBP	13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	DDX46	Q7L014	1031 aa	Known RBP	13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	LINC00116	Q8NCU8	138 aa		13.86	□□□□□ -0.19
RAB5C-208	ENST00000551338	TM6SF1	Q9BZW5	370 aa		13.86	□□□□□ -0.19

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