RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CUX1P39880 1505 aa6.51□□□□□ -1.37
LIMA1-206ENST00000550611 MSL1Q68DK7 614 aa6.51□□□□□ -1.37
LIMA1-206ENST00000550611 IGF2-ASQ6U949 168 aa6.51□□□□□ -1.37
LIMA1-206ENST00000550611 ZNF280CQ8ND82 737 aa6.51□□□□□ -1.37
LIMA1-206ENST00000550611 KRTAP4-7Q9BYR0 210 aa6.51□□□□□ -1.37
LIMA1-206ENST00000550611 PHACTR1Q9C0D0 580 aa6.51□□□□□ -1.37
LIMA1-206ENST00000550611 CHMP3Q9Y3E7 222 aa6.51□□□□□ -1.37
LIMA1-206ENST00000550611 DIP2BQ9P265 1576 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 CD97P48960 835 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 PCSK7Q16549 785 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 LCE1DQ5T752 114 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 MEGF10Q96KG7 1140 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 IGFLR1Q9H665 355 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 GDPD2Q9HCC8 539 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 FRRS1LQ9P0K9 344 aa6.5□□□□□ -1.37
LIMA1-206ENST00000550611 SKIP12755 728 aa6.49□□□□□ -1.37
LIMA1-206ENST00000550611 NCOA4Q13772 614 aa6.49□□□□□ -1.37
LIMA1-206ENST00000550611 HIF1AQ16665 826 aa6.49□□□□□ -1.37
LIMA1-206ENST00000550611 BTLAQ7Z6A9 289 aa6.49□□□□□ -1.37
LIMA1-206ENST00000550611 GSX2Q9BZM3 304 aa6.49□□□□□ -1.37
LIMA1-206ENST00000550611 HCN4Q9Y3Q4 1203 aa6.49□□□□□ -1.37
LIMA1-206ENST00000550611 FSTP19883 344 aa6.48□□□□□ -1.37
LIMA1-206ENST00000550611 ABL2P42684 1182 aa6.48□□□□□ -1.37
LIMA1-206ENST00000550611 IRAK1P51617 712 aa6.48□□□□□ -1.37
LIMA1-206ENST00000550611 GRIK5Q16478 980 aa6.48□□□□□ -1.37
LIMA1-206ENST00000550611 DZIP1LQ8IYY4 767 aaKnown RBP6.48□□□□□ -1.37
LIMA1-206ENST00000550611 TSPAN10Q9H1Z9 355 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-206ENST00000550611 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-206ENST00000550611 ABCA10Q8WWZ4 1543 aa6.48□□□□□ -1.37
LIMA1-206ENST00000550611 PRG4Q92954 1404 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-206ENST00000550611 TTBK1Q5TCY1 1321 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-206ENST00000550611 M0R2N6 131 aa6.47□□□□□ -1.37
LIMA1-206ENST00000550611 SSTR4P31391 388 aa6.47□□□□□ -1.37
LIMA1-206ENST00000550611 HSPA2P54652 639 aa6.47□□□□□ -1.37
LIMA1-206ENST00000550611 TRIM50Q86XT4 487 aa6.47□□□□□ -1.37
LIMA1-206ENST00000550611 TTC9Q92623 222 aa6.47□□□□□ -1.37
LIMA1-206ENST00000550611 NUP160Q12769 1436 aa6.47□□□□□ -1.37
LIMA1-206ENST00000550611 MAP3K6O95382 1288 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 BRPF1P55201 1214 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-206ENST00000550611 CCINQ13939 588 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 IER5Q5VY09 327 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 FAM35AQ86V20 835 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 WFDC8Q8IUA0 241 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 TPCN2Q8NHX9 752 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 PNMA5Q96PV4 448 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 LPIN3Q9BQK8 851 aa6.46□□□□□ -1.38
LIMA1-206ENST00000550611 KIAA1324LA8MWY0 1029 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-206ENST00000550611 DLL1O00548 723 aa6.45□□□□□ -1.38
LIMA1-206ENST00000550611 ZBTB7BO15156 539 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-206ENST00000550611 NFKB1P19838 968 aa6.45□□□□□ -1.38
LIMA1-206ENST00000550611 TMEM130Q8N3G9 435 aa6.45□□□□□ -1.38
LIMA1-206ENST00000550611 STAG2Q8N3U4 1231 aa6.45□□□□□ -1.38
LIMA1-206ENST00000550611 GRIN2AQ12879 1464 aa6.45□□□□□ -1.38
LIMA1-206ENST00000550611 USP17L5A8MUK1 530 aa6.44□□□□□ -1.38
LIMA1-206ENST00000550611 DEAF1O75398 565 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-206ENST00000550611 TAL1P17542 331 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-206ENST00000550611 CCDC102BQ68D86 513 aa6.44□□□□□ -1.38
LIMA1-206ENST00000550611 ALDH16A1Q8IZ83 802 aa6.44□□□□□ -1.38
LIMA1-206ENST00000550611 TRPM4Q8TD43 1214 aa6.44□□□□□ -1.38
LIMA1-206ENST00000550611 ALG2Q9H553 416 aa6.44□□□□□ -1.38
LIMA1-206ENST00000550611 AKTIPQ9H8T0 292 aa6.44□□□□□ -1.38
LIMA1-206ENST00000550611 OAS3Q9Y6K5 1087 aaKnown RBP6.44□□□□□ -1.38
LIMA1-206ENST00000550611 ABCA5Q8WWZ7 1642 aa6.43□□□□□ -1.38
LIMA1-206ENST00000550611 GSC2O15499 205 aa6.43□□□□□ -1.38
LIMA1-206ENST00000550611 PPP1R12BO60237 982 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-206ENST00000550611 CPB1P15086 417 aa6.43□□□□□ -1.38
LIMA1-206ENST00000550611 ATP1A2P50993 1020 aa6.43□□□□□ -1.38
LIMA1-206ENST00000550611 PERM1Q5SV97 790 aa6.43□□□□□ -1.38
LIMA1-206ENST00000550611 Q6ZS46 218 aa6.43□□□□□ -1.38
LIMA1-206ENST00000550611 MAPKBP1O60336 1514 aa6.43□□□□□ -1.38
LIMA1-206ENST00000550611 FHAD1B1AJZ9 1412 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 WRNQ14191 1432 aaPredicted RBP eCLIP6.42□□□□□ -1.38
LIMA1-206ENST00000550611 C21orf2O43822 256 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 FZD5Q13467 585 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 ELMSAN1Q6PJG2 1045 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 DEPDC4Q8N2C3 294 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 MRPL18Q9H0U6 180 aaKnown RBP6.42□□□□□ -1.38
LIMA1-206ENST00000550611 C11orf16Q9NQ32 467 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 KIAA1024Q9UPX6 916 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 RNF114Q9Y508 228 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 ADCY10Q96PN6 1610 aa6.42□□□□□ -1.38
LIMA1-206ENST00000550611 SHROOM2Q13796 1616 aa6.41□□□□□ -1.38
LIMA1-206ENST00000550611 TGFBR3LH3BV60 316 aa6.41□□□□□ -1.38
LIMA1-206ENST00000550611 MED26O95402 600 aa6.41□□□□□ -1.38
LIMA1-206ENST00000550611 GP2P55259 537 aaKnown RBP6.41□□□□□ -1.38
LIMA1-206ENST00000550611 PLEKHM2Q8IWE5 1019 aa6.41□□□□□ -1.38
LIMA1-206ENST00000550611 GAS2L2Q8NHY3 880 aa6.41□□□□□ -1.38
LIMA1-206ENST00000550611 C2orf49Q9BVC5 232 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-206ENST00000550611 DMGDHQ9UI17 866 aaKnown RBP6.41□□□□□ -1.38
LIMA1-206ENST00000550611 SPATA31D1Q6ZQQ2 1576 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 PPRC1Q5VV67 1664 aaKnown RBP6.4□□□□□ -1.38
LIMA1-206ENST00000550611 PBRM1Q86U86 1689 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 ZBTB42B2RXF5 422 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 F8W735 103 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-206ENST00000550611 PTCD1O75127 700 aaKnown RBP6.4□□□□□ -1.38
LIMA1-206ENST00000550611 EPB42P16452 691 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 CLDN10P78369 228 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 GPLD1P80108 840 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 PLAURQ03405 335 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 LARGE2Q8N3Y3 721 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms