RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 FAM9BQ8IZU0 186 aa8.2□□□□□ -1.1
DEPDC4-209ENST00000550587 ANKRD26Q9UPS8 1709 aa8.2□□□□□ -1.1
DEPDC4-209ENST00000550587 SMG6Q86US8 1419 aaKnown RBP8.2□□□□□ -1.1
DEPDC4-209ENST00000550587 KIF20BQ96Q89 1820 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 CHD4Q14839 1912 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 CEP350Q5VT06 3117 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 GRIN3BO60391 1043 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 FDX1P10109 184 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 HOXC9P31274 260 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 TNNT2P45379 298 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 MTHFSP49914 203 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 LCE2AQ5TA79 106 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 FLAD1Q8NFF5 587 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 HPS1Q92902 700 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 YTHDC1Q96MU7 727 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 CCNL1Q9UK58 526 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 BTAF1O14981 1849 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 MAP3K5Q99683 1374 aa8.19□□□□□ -1.1
DEPDC4-209ENST00000550587 FAM208AQ9UK61 1670 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 C6orf229H3BNL8 230 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 TATP17735 454 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 NDUFV2P19404 249 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 WNT7BP56706 349 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 ZNF827Q17R98 1081 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 SPIRE2Q8WWL2 714 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 NUDT12Q9BQG2 462 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 ATP13A2Q9NQ11 1180 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 LRRC4BQ9NT99 713 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 INSRP06213 1382 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 USP54Q70EL1 1684 aa8.18□□□□□ -1.1
DEPDC4-209ENST00000550587 GIGYF1O75420 1035 aaPredicted RBP8.17□□□□□ -1.1
DEPDC4-209ENST00000550587 CFAP53Q96M91 514 aa8.17□□□□□ -1.1
DEPDC4-209ENST00000550587 MAP3K19Q56UN5 1328 aa8.17□□□□□ -1.1
DEPDC4-209ENST00000550587 MAP2P11137 1827 aaKnown RBP8.17□□□□□ -1.1
DEPDC4-209ENST00000550587 RTL1A6NKG5 1358 aa8.16□□□□□ -1.1
DEPDC4-209ENST00000550587 CENPBP07199 599 aaPredicted RBP8.16□□□□□ -1.1
DEPDC4-209ENST00000550587 TTLL12Q14166 644 aaPredicted RBP8.16□□□□□ -1.1
DEPDC4-209ENST00000550587 PNPLA7Q6ZV29 1317 aa8.16□□□□□ -1.1
DEPDC4-209ENST00000550587 SMARCC1Q92922 1105 aaPredicted RBP8.16□□□□□ -1.1
DEPDC4-209ENST00000550587 POLKQ9UBT6 870 aa8.16□□□□□ -1.1
DEPDC4-209ENST00000550587 PCDH11XQ9BZA7 1347 aa8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 PCDH11YQ9BZA8 1340 aa8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 MOXD2PA6NHM9 499 aa8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 ZMYND10O75800 440 aa8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 ALDH1A1P00352 501 aa8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 SNRPBP14678 240 aaKnown RBP8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 KCNQ4P56696 695 aa8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 WDR43Q15061 677 aaKnown RBP eCLIP8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 ADAMTS8Q9UP79 889 aa8.15□□□□□ -1.1
DEPDC4-209ENST00000550587 HNRNPUQ00839 825 aaKnown RBP eCLIP8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 RRS1Q15050 365 aaKnown RBP8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 NBPF6Q5VWK0 638 aa8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 MPRIPQ6WCQ1 1025 aa8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 ZC3H15Q8WU90 426 aaKnown RBP8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 AK7Q96M32 723 aa8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 NBPF4Q96M43 638 aa8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 SPG7Q9UQ90 795 aa8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 PAPPAQ13219 1627 aa8.14□□□□□ -1.11
DEPDC4-209ENST00000550587 KIF24Q5T7B8 1368 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 QSER1Q2KHR3 1735 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 PPM1GO15355 546 aaPredicted RBP8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 SIAH2O43255 324 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 WFS1O76024 890 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 MS4A1P11836 297 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 FBLN1P23142 703 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 COL23A1Q86Y22 540 aaPredicted RBP8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 USHBP1Q8N6Y0 703 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 NUDCQ9Y266 331 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 CD2APQ9Y5K6 639 aa8.13□□□□□ -1.11
DEPDC4-209ENST00000550587 FLT4P35916 1363 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 DIAPH1O60610 1272 aaKnown RBP8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 CCNYL3P0C7X3 344 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 SH3BP2P78314 561 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 AMHR2Q16671 573 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 GIGYF2Q6Y7W6 1299 aaKnown RBP8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 EHBP1Q8NDI1 1231 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 NLGN2Q8NFZ4 835 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 EMILIN1Q9Y6C2 1016 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 DOT1LQ8TEK3 1739 aa8.12□□□□□ -1.11
DEPDC4-209ENST00000550587 ZBED9Q6R2W3 1325 aa8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 NFX1Q12986 1120 aaKnown RBP8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 HSP90AB2PQ58FF8 381 aa8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 MSL1Q68DK7 614 aa8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 NGEFQ8N5V2 710 aa8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 PRR7Q8TB68 274 aa8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 TRIM47Q96LD4 638 aa8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 BEGAINQ9BUH8 593 aa8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 GPBP1L1Q9HC44 474 aaPredicted RBP8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 COL3A1P02461 1466 aaPredicted RBP8.11□□□□□ -1.11
DEPDC4-209ENST00000550587 PALLDQ8WX93 1383 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 MEGF6O75095 1541 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 LY75O60449 1722 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 IL13P35225 146 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 PTPRNQ16849 979 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 LINC01559Q495D7 138 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 UNC93B1Q9H1C4 597 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 PNNQ9H307 717 aaKnown RBP8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 SENP2Q9HC62 589 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 TMOD3Q9NYL9 352 aa8.1□□□□□ -1.11
DEPDC4-209ENST00000550587 U2AF1L5P0DN76 240 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms