RNA–Protein interactions for RNA: ENST00000547939.5

TUBA1A-204, Transcript of tubulin alpha 1a, human

TSL 3

Gene TUBA1A, Length 946 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TUBA1A-204	ENST00000547939	PPEF1	O14829	653 aa	Predicted RBP	13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	DDX58	O95786	925 aa	Known RBP	13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	HCLS1	P14317	486 aa	Predicted RBP	13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	HSP90B1	P14625	803 aa	Known RBP	13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	OLFM4	Q6UX06	510 aa		13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	DDX46	Q7L014	1031 aa	Known RBP	13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	C8orf58	Q8NAV2	365 aa		13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	JDP2	Q8WYK2	163 aa		13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	PSMD1	Q99460	953 aa		13.5	□□□□□ -0.25
TUBA1A-204	ENST00000547939	IL16	Q14005	1332 aa		13.49	□□□□□ -0.25
TUBA1A-204	ENST00000547939	TCERG1	O14776	1098 aa	Known RBP	13.49	□□□□□ -0.25
TUBA1A-204	ENST00000547939	BBOX1	O75936	387 aa		13.49	□□□□□ -0.25
TUBA1A-204	ENST00000547939	IARS	P41252	1262 aa	Known RBP	13.49	□□□□□ -0.25
TUBA1A-204	ENST00000547939	ISCA1	Q9BUE6	129 aa		13.49	□□□□□ -0.25
TUBA1A-204	ENST00000547939	STK31	Q9BXU1	1019 aa		13.49	□□□□□ -0.25
TUBA1A-204	ENST00000547939	ATP5J2-PTCD1	G3V325	749 aa		13.48	□□□□□ -0.25
TUBA1A-204	ENST00000547939	TRIM28	Q13263	835 aa	Known RBP	13.48	□□□□□ -0.25
TUBA1A-204	ENST00000547939	C3orf67	Q6ZVT6	689 aa		13.48	□□□□□ -0.25
TUBA1A-204	ENST00000547939	TSR2	Q969E8	191 aa	Known RBP	13.48	□□□□□ -0.25
TUBA1A-204	ENST00000547939	PHAX	Q9H814	394 aa	Known RBP	13.48	□□□□□ -0.25
TUBA1A-204	ENST00000547939	IQCA1L	A6NCM1	817 aa		13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	FMR1	Q06787	632 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	WDR63	Q8IWG1	891 aa		13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	FAM9B	Q8IZU0	186 aa		13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	FAM89A	Q96GI7	184 aa		13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	SALL2	Q9Y467	1007 aa	Predicted RBP	13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	ATP6V0A2	Q9Y487	856 aa		13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	CEP290	O15078	2479 aa		13.47	□□□□□ -0.25
TUBA1A-204	ENST00000547939	ABCC4	O15439	1325 aa		13.46	□□□□□ -0.25
TUBA1A-204	ENST00000547939	EIF6	P56537	245 aa	Known RBP	13.46	□□□□□ -0.25
TUBA1A-204	ENST00000547939	TWISTNB	Q3B726	338 aa	Predicted RBP	13.46	□□□□□ -0.25
TUBA1A-204	ENST00000547939	TMC4	Q7Z404	712 aa		13.46	□□□□□ -0.25
TUBA1A-204	ENST00000547939	LARGE2	Q8N3Y3	721 aa		13.46	□□□□□ -0.25
TUBA1A-204	ENST00000547939	SUPT20H	Q8NEM7	779 aa		13.46	□□□□□ -0.25
TUBA1A-204	ENST00000547939	ZNF541	Q9H0D2	1346 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	GRAP	Q13588	217 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	PRPF38B	Q5VTL8	546 aa	Known RBP	13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	MAP1S	Q66K74	1059 aa	Predicted RBP	13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	SP8	Q8IXZ3	490 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	TSPYL6	Q8N831	410 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CCDC191	Q8NCU4	936 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	GRAPL	Q8TC17	118 aa	Predicted RBP	13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	ZNF428	Q96B54	188 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CAPNS2	Q96L46	248 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	MYD88	Q99836	296 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	VPS33B	Q9H267	617 aa		13.45	□□□□□ -0.26
TUBA1A-204	ENST00000547939	NUP98	P52948	1817 aa		13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	FZD9	O00144	591 aa		13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	IRS4	O14654	1257 aa	Predicted RBP	13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	NEXN	Q0ZGT2	675 aa		13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	SF3B3	Q15393	1217 aa	Known RBP	13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	RTL5	Q5HYW3	569 aa	Predicted RBP	13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CYP4F22	Q6NT55	531 aa		13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	DPP8	Q6V1X1	898 aa	Predicted RBP	13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	KSR2	Q6VAB6	950 aa		13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	NIM1K	Q8IY84	436 aa		13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	MPND	Q8N594	471 aa		13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	METTL22	Q9BUU2	404 aa	Predicted RBP	13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CWC25	Q9NXE8	425 aa	Predicted RBP	13.44	□□□□□ -0.26
TUBA1A-204	ENST00000547939	PPIP5K2	O43314	1243 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	SLC4A2	P04920	1241 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	EAPP	Q56P03	285 aa	Predicted RBP	13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CNTROB	Q8N137	903 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	GPC2	Q8N158	579 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	MYH16	Q9H6N6	1097 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	HACL1	Q9UJ83	578 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	MAP3K2	Q9Y2U5	619 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939		A0A0C4DFX4	3053 aa		13.43	□□□□□ -0.26
TUBA1A-204	ENST00000547939	PI4KAP2	A4QPH2	592 aa		13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	AOC2	O75106	756 aa		13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	PCCA	P05165	728 aa	Predicted RBP	13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	PI4KAP1	Q8N8J0	262 aa		13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	GPR101	Q96P66	508 aa	Predicted RBP	13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	ABT1	Q9ULW3	272 aa	Known RBP	13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	AKAP11	Q9UKA4	1901 aa		13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	TRIOBP	Q9H2D6	2365 aa		13.42	□□□□□ -0.26
TUBA1A-204	ENST00000547939	FANCI	Q9NVI1	1328 aa		13.41	□□□□□ -0.26
TUBA1A-204	ENST00000547939	COL4A5	P29400	1685 aa		13.41	□□□□□ -0.26
TUBA1A-204	ENST00000547939	LMOD1	P29536	600 aa	Predicted RBP	13.41	□□□□□ -0.26
TUBA1A-204	ENST00000547939	SOX10	P56693	466 aa		13.41	□□□□□ -0.26
TUBA1A-204	ENST00000547939	PNMA8A	Q86V59	439 aa	Predicted RBP	13.41	□□□□□ -0.26
TUBA1A-204	ENST00000547939	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.41	□□□□□ -0.26
TUBA1A-204	ENST00000547939	GJA3	Q9Y6H8	435 aa		13.41	□□□□□ -0.26
TUBA1A-204	ENST00000547939	PDE8A	O60658	829 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	EPHX2	P34913	555 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	RPS8	P62241	208 aa	Known RBP	13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	DGKZ	Q13574	1117 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	AOC3	Q16853	763 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CCDC152	Q4G0S7	254 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CST9	Q5W186	159 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	CLEC11A	Q9Y240	323 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	BRCA2	P51587	3418 aa		13.4	□□□□□ -0.26
TUBA1A-204	ENST00000547939	POLR2A	P24928	1970 aa	Known RBP	13.4	□□□□□ -0.27
TUBA1A-204	ENST00000547939	SNED1	Q8TER0	1413 aa		13.39	□□□□□ -0.27
TUBA1A-204	ENST00000547939	EXOSC9	Q06265	439 aa	Known RBP	13.39	□□□□□ -0.27
TUBA1A-204	ENST00000547939	ZNRF3	Q9ULT6	936 aa		13.39	□□□□□ -0.27
TUBA1A-204	ENST00000547939	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.39	□□□□□ -0.27
TUBA1A-204	ENST00000547939	CENPF	P49454	3210 aa		13.39	□□□□□ -0.27
TUBA1A-204	ENST00000547939	VAMP4	O75379	141 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms