RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 FERMT3Q86UX7 667 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 JARID2Q92833 1246 aaPredicted RBP10.34□□□□□ -0.75
TDP1-204ENST00000545686 GTF3C6Q969F1 213 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 EAF2Q96CJ1 260 aaPredicted RBP10.34□□□□□ -0.75
TDP1-204ENST00000545686 ZSCAN16Q9H4T2 348 aaPredicted RBP10.34□□□□□ -0.75
TDP1-204ENST00000545686 RNMTO43148 476 aaKnown RBP10.34□□□□□ -0.75
TDP1-204ENST00000545686 ANXA1P04083 346 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 LARP1Q6PKG0 1096 aaKnown RBP10.34□□□□□ -0.75
TDP1-204ENST00000545686 SARM1Q6SZW1 724 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 KCNH5Q8NCM2 988 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 FEZ1Q99689 392 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 PAXBP1Q9Y5B6 917 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 ARFGEF2Q9Y6D5 1785 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 KIF1AQ12756 1690 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 NEMFO60524 1076 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 RESTQ13127 1097 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 CAMK4Q16566 473 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 ZSCAN25Q6NSZ9 544 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 CCDC186Q7Z3E2 898 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 KAZALD1Q96I82 304 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 SUCLG2Q96I99 432 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 ARID3AQ99856 593 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 TRIM5Q9C035 493 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 CFAP45Q9UL16 551 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 SPEF2Q9C093 1822 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 CTAGE5O15320 804 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 ZNF165P49910 485 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 C1orf141Q5JVX7 400 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 CKAP2LQ8IYA6 745 aa10.33□□□□□ -0.76
TDP1-204ENST00000545686 THEMISQ8N1K5 641 aaPredicted RBP10.33□□□□□ -0.76
TDP1-204ENST00000545686 BICC1Q9H694 974 aaKnown RBP10.33□□□□□ -0.76
TDP1-204ENST00000545686 DDX21Q9NR30 783 aaKnown RBP eCLIP10.33□□□□□ -0.76
TDP1-204ENST00000545686 LAMB4A4D0S4 1761 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 TAF5LO75529 589 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 CWF19L2Q2TBE0 894 aaKnown RBP10.32□□□□□ -0.76
TDP1-204ENST00000545686 DRC7Q8IY82 874 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 BICD2Q8TD16 824 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 LLPHQ9BRT6 129 aaKnown RBP10.32□□□□□ -0.76
TDP1-204ENST00000545686 PHF8Q9UPP1 1060 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 COL15A1P39059 1388 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 RGPD5Q99666 1765 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 NR1I2O75469 434 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 PROSER3Q2NL68 480 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 FAM173BQ6P4H8 233 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 DDX54Q8TDD1 881 aaKnown RBP10.32□□□□□ -0.76
TDP1-204ENST00000545686 MRFAP1L1Q96HT8 127 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 PGBD1Q96JS3 809 aa10.32□□□□□ -0.76
TDP1-204ENST00000545686 CCDC8Q9H0W5 538 aaPredicted RBP10.32□□□□□ -0.76
TDP1-204ENST00000545686 ATP2B3Q16720 1220 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 ATL3Q6DD88 541 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 TICAM2Q86XR7 235 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 TLR7Q9NYK1 1049 aaKnown RBP10.31□□□□□ -0.76
TDP1-204ENST00000545686 CHMP3Q9Y3E7 222 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 U3KPZ7 1027 aaPredicted RBP10.31□□□□□ -0.76
TDP1-204ENST00000545686 KIF20AO95235 890 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 KCNA6P17658 529 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 ATP5JP18859 108 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 NCBP1Q09161 790 aaKnown RBP10.31□□□□□ -0.76
TDP1-204ENST00000545686 NAA16Q6N069 864 aaPredicted RBP10.31□□□□□ -0.76
TDP1-204ENST00000545686 MPRIPQ6WCQ1 1025 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 ZNF589Q86UQ0 364 aaPredicted RBP10.31□□□□□ -0.76
TDP1-204ENST00000545686 BRF1Q92994 677 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 BOLA2Q9H3K6 86 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 PRDM10Q9NQV6 1147 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 CLIP2Q9UDT6 1046 aa10.31□□□□□ -0.76
TDP1-204ENST00000545686 DDX60Q8IY21 1712 aaKnown RBP10.31□□□□□ -0.76
TDP1-204ENST00000545686 TRPM3Q9HCF6 1732 aaPredicted RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 TNNT1P13805 278 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 CBX1P83916 185 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 LRMPQ12912 555 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 STX1AQ16623 288 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 SMARCC2Q8TAQ2 1214 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 NEK1Q96PY6 1258 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 DNAJC25Q9H1X3 360 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 CGNQ9P2M7 1197 aaKnown RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 TFIP11Q9UBB9 837 aaKnown RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 ABCC6O95255 1503 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 FAM177BA6PVY3 158 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 GOLGA6L19H0YKK7 550 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 H3BQV1 296 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 HMGB1P09429 215 aaKnown RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 RBM6P78332 1123 aaKnown RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 COL9A3Q14050 684 aaPredicted RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 IQCB1Q15051 598 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 IFFO2Q5TF58 517 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 C14orf37Q86TY3 774 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 C16orf45Q96MC5 204 aaPredicted RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 TCEANC2Q96MN5 208 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 COPRSQ9NQ92 184 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 TAF6LQ9Y6J9 622 aa10.3□□□□□ -0.76
TDP1-204ENST00000545686 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.3□□□□□ -0.76
TDP1-204ENST00000545686 DTNBO60941 627 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 NEXNQ0ZGT2 675 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 CCDC112Q8NEF3 446 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 KCND1Q9NSA2 647 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 OGFRQ9NZT2 677 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 ZNF609O15014 1411 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 NEURL1BA8MQ27 555 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 JAK2O60674 1132 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 PFKFB2O60825 505 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms