RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	NLGN2	Q8NFZ4	835 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	HS3ST6	Q96QI5	342 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	HEG1	Q9ULI3	1381 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	CACNA1S	Q13698	1873 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	COL15A1	P39059	1388 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	SOS1	Q07889	1333 aa	Predicted RBP	10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	USP42	Q9H9J4	1324 aa	Known RBP	10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	CYP19A1	P11511	503 aa	Predicted RBP	10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	YY1	P25490	414 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	RFC4	P35249	363 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	INTS5	Q6P9B9	1019 aa	Known RBP	10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	ZNF790	Q6PG37	636 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	DNAJC10	Q8IXB1	793 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	NLGN1	Q8N2Q7	840 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	MRPL50	Q8N5N7	158 aa	Known RBP	10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	CCDC87	Q9NVE4	849 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	VPS9D1	Q9Y2B5	631 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	NUP98	P52948	1817 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	ARFGEF2	Q9Y6D5	1785 aa		10.19	□□□□□ -0.78
SNHG1-223	ENST00000545440	PXDNL	A1KZ92	1463 aa		10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	HTATSF1	O43719	755 aa	Known RBP	10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	NEFM	P07197	916 aa		10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	MMP10	P09238	476 aa		10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	GYS1	P13807	737 aa		10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	FLII	Q13045	1269 aa		10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	DDX10	Q13206	875 aa	Known RBP	10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	DMRTA1	Q5VZB9	504 aa		10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	RTF1	Q92541	710 aa	Known RBP	10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	TBC1D2	Q9BYX2	928 aa		10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	SEPT9	Q9UHD8	586 aa	Predicted RBP	10.18	□□□□□ -0.78
SNHG1-223	ENST00000545440	SBF1	O95248	1867 aa		10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	COL11A2	P13942	1736 aa	Predicted RBP	10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	CD46	P15529	392 aa		10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	ZEB1	P37275	1124 aa	Predicted RBP	10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	GPR162	Q16538	588 aa		10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	GRIPAP1	Q4V328	841 aa		10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	ZNF496	Q96IT1	587 aa	Predicted RBP	10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	FMNL2	Q96PY5	1086 aa		10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	PNN	Q9H307	717 aa	Known RBP	10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	ZBTB1	Q9Y2K1	713 aa		10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	CCDC88A	Q3V6T2	1871 aa		10.17	□□□□□ -0.78
SNHG1-223	ENST00000545440	BTBD11	A6QL63	1104 aa		10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	RNF40	O75150	1001 aa		10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	STARD3NL	O95772	234 aa		10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	USP46	P62068	366 aa		10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	PLEKHF1	Q96S99	279 aa		10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	TEX13A	Q9BXU3	409 aa	Predicted RBP	10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	POLR3E	Q9NVU0	708 aa		10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	ANKRD36C	Q5JPF3	1778 aa		10.16	□□□□□ -0.78
SNHG1-223	ENST00000545440	MAPK8IP3	Q9UPT6	1336 aa		10.15	□□□□□ -0.78
SNHG1-223	ENST00000545440	GRIN3B	O60391	1043 aa		10.15	□□□□□ -0.78
SNHG1-223	ENST00000545440	YBX3	P16989	372 aa	Known RBP eCLIP	10.15	□□□□□ -0.78
SNHG1-223	ENST00000545440	CLK2	P49760	499 aa	Known RBP	10.15	□□□□□ -0.78
SNHG1-223	ENST00000545440	SWT1	Q5T5J6	900 aa	Known RBP	10.15	□□□□□ -0.78
SNHG1-223	ENST00000545440	MCM10	Q7L590	875 aa		10.15	□□□□□ -0.78
SNHG1-223	ENST00000545440	SRP68	Q9UHB9	627 aa	Known RBP	10.15	□□□□□ -0.78
SNHG1-223	ENST00000545440	ZPR1	O75312	459 aa		10.14	□□□□□ -0.79
SNHG1-223	ENST00000545440	NFE2L2	Q16236	605 aa		10.14	□□□□□ -0.79
SNHG1-223	ENST00000545440	MYSM1	Q5VVJ2	828 aa		10.14	□□□□□ -0.79
SNHG1-223	ENST00000545440	NARF	Q9UHQ1	456 aa		10.14	□□□□□ -0.79
SNHG1-223	ENST00000545440	PARP3	Q9Y6F1	533 aa		10.14	□□□□□ -0.79
SNHG1-223	ENST00000545440	DICER1	Q9UPY3	1922 aa	Known RBP	10.13	□□□□□ -0.79
SNHG1-223	ENST00000545440		A0A087WZG4	1122 aa		10.13	□□□□□ -0.79
SNHG1-223	ENST00000545440	KDM4A	O75164	1064 aa		10.13	□□□□□ -0.79
SNHG1-223	ENST00000545440	EIF5	P55010	431 aa	Known RBP	10.13	□□□□□ -0.79
SNHG1-223	ENST00000545440	TGFB2	P61812	414 aa		10.13	□□□□□ -0.79
SNHG1-223	ENST00000545440	LSM11	P83369	360 aa	Known RBP eCLIP	10.13	□□□□□ -0.79	1e-6	■□□□□ 9.9
SNHG1-223	ENST00000545440	DDR1	Q08345	913 aa		10.13	□□□□□ -0.79
SNHG1-223	ENST00000545440	KCNQ3	O43525	872 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	SNRPA1	P09661	255 aa	Known RBP	10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	CANX	P27824	592 aa	Known RBP	10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	IL6ST	P40189	918 aa	Predicted RBP	10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	DCTN1	Q14203	1278 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	TAF7	Q15545	349 aa	Predicted RBP	10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	USPL1	Q5W0Q7	1092 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	ANKRD13D	Q6ZTN6	518 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	RIC3	Q7Z5B4	369 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	SPIRE2	Q8WWL2	714 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	LRCH3	Q96II8	777 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	PRR14	Q9BWN1	585 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	TIAM2	Q8IVF5	1701 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	FER1L6	Q2WGJ9	1857 aa		10.12	□□□□□ -0.79
SNHG1-223	ENST00000545440	POLRMT	O00411	1230 aa	Known RBP	10.11	□□□□□ -0.79
SNHG1-223	ENST00000545440	TM4SF1	P30408	202 aa		10.11	□□□□□ -0.79
SNHG1-223	ENST00000545440	KMT5B	Q4FZB7	885 aa		10.11	□□□□□ -0.79
SNHG1-223	ENST00000545440	ADGRD1	Q6QNK2	874 aa		10.11	□□□□□ -0.79
SNHG1-223	ENST00000545440	POTEE	Q6S8J3	1075 aa		10.11	□□□□□ -0.79
SNHG1-223	ENST00000545440	PNISR	Q8TF01	805 aa	Known RBP	10.11	□□□□□ -0.79
SNHG1-223	ENST00000545440	ADCY9	O60503	1353 aa		10.11	□□□□□ -0.79
SNHG1-223	ENST00000545440	C3orf80	F5H4A9	247 aa		10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	GJA5	P36382	358 aa		10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	LMOD3	Q0VAK6	560 aa		10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	NFIX	Q14938	502 aa		10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	SAMD7	Q7Z3H4	446 aa		10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	ZNF784	Q8NCA9	323 aa	Predicted RBP	10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	ANKK1	Q8NFD2	765 aa		10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	ZFR	Q96KR1	1074 aa	Known RBP	10.1	□□□□□ -0.79
SNHG1-223	ENST00000545440	CARMIL3	Q8ND23	1372 aa		10.1	□□□□□ -0.79

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