RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 EGFRP00533 1210 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 U2AF1L5P0DN76 240 aaPredicted RBP12.52□□□□□ -0.41
CHD4-212ENST00000545083 U2AF1Q01081 240 aaKnown RBP eCLIP12.52□□□□□ -0.41
CHD4-212ENST00000545083 TNIP1Q15025 636 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 SLC10A5Q5PT55 438 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 PRPF38BQ5VTL8 546 aaKnown RBP12.52□□□□□ -0.41
CHD4-212ENST00000545083 RGMBQ6NW40 437 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 DPP8Q6V1X1 898 aaPredicted RBP12.52□□□□□ -0.41
CHD4-212ENST00000545083 GIGYF2Q6Y7W6 1299 aaKnown RBP12.52□□□□□ -0.41
CHD4-212ENST00000545083 SAMD7Q7Z3H4 446 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 MICALL2Q8IY33 904 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 MPNDQ8N594 471 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 RNF186Q9NXI6 227 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 SAGE1Q9NXZ1 904 aa12.52□□□□□ -0.41
CHD4-212ENST00000545083 ZBTB12Q9Y330 459 aaPredicted RBP12.52□□□□□ -0.41
CHD4-212ENST00000545083 ADM5C9JUS6 153 aa12.51□□□□□ -0.41
CHD4-212ENST00000545083 TRPA1O75762 1119 aa12.51□□□□□ -0.41
CHD4-212ENST00000545083 EIF4A1P60842 406 aaKnown RBP12.51□□□□□ -0.41
CHD4-212ENST00000545083 PPP1R42Q7Z4L9 355 aa12.51□□□□□ -0.41
CHD4-212ENST00000545083 SP8Q8IXZ3 490 aa12.51□□□□□ -0.41
CHD4-212ENST00000545083 TMX4Q9H1E5 349 aaPredicted RBP12.51□□□□□ -0.41
CHD4-212ENST00000545083 GBA2Q9HCG7 927 aaPredicted RBP12.51□□□□□ -0.41
CHD4-212ENST00000545083 DUOX1Q9NRD9 1551 aa12.51□□□□□ -0.41
CHD4-212ENST00000545083 H7C1D1 291 aa12.5□□□□□ -0.41
CHD4-212ENST00000545083 TBC1D10BQ4KMP7 808 aaPredicted RBP12.5□□□□□ -0.41
CHD4-212ENST00000545083 PARP10Q53GL7 1025 aa12.5□□□□□ -0.41
CHD4-212ENST00000545083 KRT26Q7Z3Y9 468 aa12.5□□□□□ -0.41
CHD4-212ENST00000545083 LRP10Q7Z4F1 713 aa12.5□□□□□ -0.41
CHD4-212ENST00000545083 CFAP53Q96M91 514 aa12.5□□□□□ -0.41
CHD4-212ENST00000545083 NUDCQ9Y266 331 aa12.5□□□□□ -0.41
CHD4-212ENST00000545083 KDM3BQ7LBC6 1761 aa12.5□□□□□ -0.41
CHD4-212ENST00000545083 PSMD14O00487 310 aa12.49□□□□□ -0.41
CHD4-212ENST00000545083 BBOX1O75936 387 aa12.49□□□□□ -0.41
CHD4-212ENST00000545083 HCLS1P14317 486 aaPredicted RBP12.49□□□□□ -0.41
CHD4-212ENST00000545083 ZNF157P51786 506 aaPredicted RBP12.49□□□□□ -0.41
CHD4-212ENST00000545083 CCDC102AQ96A19 550 aa12.49□□□□□ -0.41
CHD4-212ENST00000545083 CSRNP1Q96S65 589 aa12.49□□□□□ -0.41
CHD4-212ENST00000545083 THUMPD2Q9BTF0 503 aaKnown RBP12.49□□□□□ -0.41
CHD4-212ENST00000545083 UTP14AQ9BVJ6 771 aaKnown RBP12.49□□□□□ -0.41
CHD4-212ENST00000545083 SLC10A3P09131 477 aa12.48□□□□□ -0.41
CHD4-212ENST00000545083 PDIA6Q15084 440 aa12.48□□□□□ -0.41
CHD4-212ENST00000545083 CTU1Q7Z7A3 348 aaKnown RBP12.48□□□□□ -0.41
CHD4-212ENST00000545083 C2orf69Q8N8R5 385 aa12.48□□□□□ -0.41
CHD4-212ENST00000545083 DPF2Q92785 391 aa12.48□□□□□ -0.41
CHD4-212ENST00000545083 ASTN2O75129 1339 aaPredicted RBP12.47□□□□□ -0.41
CHD4-212ENST00000545083 ANXA1P04083 346 aa12.47□□□□□ -0.41
CHD4-212ENST00000545083 GRAPQ13588 217 aa12.47□□□□□ -0.41
CHD4-212ENST00000545083 PROSER3Q2NL68 480 aa12.47□□□□□ -0.41
CHD4-212ENST00000545083 GRAPLQ8TC17 118 aaPredicted RBP12.47□□□□□ -0.41
CHD4-212ENST00000545083 PNISRQ8TF01 805 aaKnown RBP12.47□□□□□ -0.41
CHD4-212ENST00000545083 KCNQ5Q9NR82 932 aa12.47□□□□□ -0.41
CHD4-212ENST00000545083 HPS5Q9UPZ3 1129 aa12.47□□□□□ -0.41
CHD4-212ENST00000545083 LAMB2P55268 1798 aa12.46□□□□□ -0.41
CHD4-212ENST00000545083 ERBB4Q15303 1308 aa12.46□□□□□ -0.41
CHD4-212ENST00000545083 PPP2R1AP30153 589 aa12.46□□□□□ -0.41
CHD4-212ENST00000545083 RBM26Q5T8P6 1007 aaKnown RBP12.46□□□□□ -0.41
CHD4-212ENST00000545083 DDX46Q7L014 1031 aaKnown RBP12.46□□□□□ -0.41
CHD4-212ENST00000545083 NLRP10Q86W26 655 aa12.46□□□□□ -0.41
CHD4-212ENST00000545083 DBNDD1Q9H9R9 158 aa12.46□□□□□ -0.41
CHD4-212ENST00000545083 POLR2AP24928 1970 aaKnown RBP12.46□□□□□ -0.41
CHD4-212ENST00000545083 RTL9Q8NET4 1388 aa12.45□□□□□ -0.42
CHD4-212ENST00000545083 TAF1P21675 1872 aa12.45□□□□□ -0.42
CHD4-212ENST00000545083 RASAL3Q86YV0 1011 aa12.45□□□□□ -0.42
CHD4-212ENST00000545083 ZNF428Q96B54 188 aa12.45□□□□□ -0.42
CHD4-212ENST00000545083 DCPSQ96C86 337 aaKnown RBP12.45□□□□□ -0.42
CHD4-212ENST00000545083 RIMBP2O15034 1052 aa12.44□□□□□ -0.42
CHD4-212ENST00000545083 WASHC4Q2M389 1173 aa12.44□□□□□ -0.42
CHD4-212ENST00000545083 GGA3Q9NZ52 723 aa12.44□□□□□ -0.42
CHD4-212ENST00000545083 POLLQ9UGP5 575 aa12.44□□□□□ -0.42
CHD4-212ENST00000545083 LRRC37AA6NMS7 1700 aa12.44□□□□□ -0.42
CHD4-212ENST00000545083 COL4A1P02462 1669 aa12.44□□□□□ -0.42
CHD4-212ENST00000545083 ANKRD36CQ5JPF3 1778 aa12.43□□□□□ -0.42
CHD4-212ENST00000545083 ECE2O60344 883 aa12.43□□□□□ -0.42
CHD4-212ENST00000545083 EIF2S2P20042 333 aaKnown RBP12.43□□□□□ -0.42
CHD4-212ENST00000545083 DOK7Q18PE1 504 aa12.43□□□□□ -0.42
CHD4-212ENST00000545083 KIF4BQ2VIQ3 1234 aa12.43□□□□□ -0.42
CHD4-212ENST00000545083 CELF1Q92879 486 aaKnown RBP12.43□□□□□ -0.42
CHD4-212ENST00000545083 CDCA5Q96FF9 252 aa12.43□□□□□ -0.42
CHD4-212ENST00000545083 DLG5Q8TDM6 1919 aa12.43□□□□□ -0.42
CHD4-212ENST00000545083 AKAP11Q9UKA4 1901 aa12.43□□□□□ -0.42
CHD4-212ENST00000545083 SH3TC1Q8TE82 1336 aa12.42□□□□□ -0.42
CHD4-212ENST00000545083 RPS12P25398 132 aaKnown RBP12.42□□□□□ -0.42
CHD4-212ENST00000545083 GPSM2P81274 684 aa12.42□□□□□ -0.42
CHD4-212ENST00000545083 SULF1Q8IWU6 871 aa12.42□□□□□ -0.42
CHD4-212ENST00000545083 ZNF296Q8WUU4 475 aaPredicted RBP12.42□□□□□ -0.42
CHD4-212ENST00000545083 PLEKHF1Q96S99 279 aa12.42□□□□□ -0.42
CHD4-212ENST00000545083 TRMT112Q9UI30 125 aaKnown RBP12.42□□□□□ -0.42
CHD4-212ENST00000545083 NSFL1CQ9UNZ2 370 aaKnown RBP12.42□□□□□ -0.42
CHD4-212ENST00000545083 C6orf229H3BNL8 230 aa12.41□□□□□ -0.42
CHD4-212ENST00000545083 TBC1D8O95759 1140 aa12.41□□□□□ -0.42
CHD4-212ENST00000545083 AIMP1Q12904 312 aaKnown RBP12.41□□□□□ -0.42
CHD4-212ENST00000545083 COPS6Q7L5N1 327 aa12.41□□□□□ -0.42
CHD4-212ENST00000545083 TMC4Q7Z404 712 aa12.41□□□□□ -0.42
CHD4-212ENST00000545083 XAGE3Q8WTP9 111 aa12.41□□□□□ -0.42
CHD4-212ENST00000545083 SCN9AQ15858 1988 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 KCNA4P22459 653 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 TCIRG1Q13488 830 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 NFE2L2Q16236 605 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 HSP90AB3PQ58FF7 597 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 ANGEL2Q5VTE6 544 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms