RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 PUS3Q9BZE2 481 aaKnown RBP17.12■□□□□ 0.33
LDB3-207ENST00000542786 BCL9LQ86UU0 1499 aa17.12■□□□□ 0.33
LDB3-207ENST00000542786 PIP4K2BP78356 416 aa17.12■□□□□ 0.33
LDB3-207ENST00000542786 HSP90AB3PQ58FF7 597 aa17.12■□□□□ 0.33
LDB3-207ENST00000542786 MAP4K1Q92918 833 aa17.12■□□□□ 0.33
LDB3-207ENST00000542786 FAM89AQ96GI7 184 aa17.12■□□□□ 0.33
LDB3-207ENST00000542786 FSD1Q9BTV5 496 aa17.12■□□□□ 0.33
LDB3-207ENST00000542786 FBXO3Q9UK99 471 aa17.12■□□□□ 0.33
LDB3-207ENST00000542786 LRP5O75197 1615 aa17.11■□□□□ 0.33
LDB3-207ENST00000542786 EIF5P55010 431 aaKnown RBP17.11■□□□□ 0.33
LDB3-207ENST00000542786 PKP1Q13835 747 aa17.11■□□□□ 0.33
LDB3-207ENST00000542786 SYNE4Q8N205 404 aa17.11■□□□□ 0.33
LDB3-207ENST00000542786 ZDHHC9Q9Y397 364 aa17.11■□□□□ 0.33
LDB3-207ENST00000542786 RIC1Q4ADV7 1423 aa17.1■□□□□ 0.33
LDB3-207ENST00000542786 NUCB2P80303 420 aa17.1■□□□□ 0.33
LDB3-207ENST00000542786 INTS4Q96HW7 963 aaKnown RBP17.1■□□□□ 0.33
LDB3-207ENST00000542786 ZNF831Q5JPB2 1677 aa17.1■□□□□ 0.33
LDB3-207ENST00000542786 ITPK1Q13572 414 aa17.1■□□□□ 0.33
LDB3-207ENST00000542786 ZNF34Q8IZ26 560 aa17.1■□□□□ 0.33
LDB3-207ENST00000542786 GBP4Q96PP9 640 aa17.1■□□□□ 0.33
LDB3-207ENST00000542786 TM6SF1Q9BZW5 370 aa17.1■□□□□ 0.33
LDB3-207ENST00000542786 RBM8AQ9Y5S9 174 aaKnown RBP17.1■□□□□ 0.33
LDB3-207ENST00000542786 UBN2Q6ZU65 1347 aa17.09■□□□□ 0.33
LDB3-207ENST00000542786 GPTP24298 496 aa17.09■□□□□ 0.33
LDB3-207ENST00000542786 ZNF589Q86UQ0 364 aaPredicted RBP17.09■□□□□ 0.33
LDB3-207ENST00000542786 SPEF2Q9C093 1822 aa17.09■□□□□ 0.33
LDB3-207ENST00000542786 PALLDQ8WX93 1383 aa17.09■□□□□ 0.33
LDB3-207ENST00000542786 RPAP1Q9BWH6 1393 aaPredicted RBP17.09■□□□□ 0.33
LDB3-207ENST00000542786 COL5A3P25940 1745 aaPredicted RBP17.08■□□□□ 0.33
LDB3-207ENST00000542786 TRAK2O60296 914 aa17.08■□□□□ 0.33
LDB3-207ENST00000542786 PRPF40BQ6NWY9 871 aaKnown RBP17.08■□□□□ 0.33
LDB3-207ENST00000542786 DZIP3Q86Y13 1208 aaKnown RBP17.08■□□□□ 0.33
LDB3-207ENST00000542786 ACSBG1Q96GR2 724 aa17.08■□□□□ 0.33
LDB3-207ENST00000542786 CCDC87Q9NVE4 849 aa17.08■□□□□ 0.33
LDB3-207ENST00000542786 NDUFB9Q9Y6M9 179 aa17.08■□□□□ 0.33
LDB3-207ENST00000542786 MYH14Q7Z406 1995 aaKnown RBP17.08■□□□□ 0.32
LDB3-207ENST00000542786 LOC102724428A0A0B4J2F2 783 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 SIK1P57059 783 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 TIMM10P62072 90 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 ADCK5Q3MIX3 580 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 CREB3L3Q68CJ9 461 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 TICAM2Q86XR7 235 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 TTLL11Q8NHH1 800 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 ZSWIM6Q9HCJ5 1215 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 MYH3P11055 1940 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 KAT6BQ8WYB5 2073 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 TAF5LO75529 589 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 BAG4O95429 457 aaKnown RBP17.07■□□□□ 0.32
LDB3-207ENST00000542786 CRKLP46109 303 aaKnown RBP17.07■□□□□ 0.32
LDB3-207ENST00000542786 VPS72Q15906 364 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 CCDC57Q2TAC2 916 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 USPL1Q5W0Q7 1092 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 RUFY3Q7L099 469 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 KBTBD3Q8NAB2 608 aa17.07■□□□□ 0.32
LDB3-207ENST00000542786 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.07■□□□□ 0.32
LDB3-207ENST00000542786 A0A1B0GUL7 405 aa17.06■□□□□ 0.32
LDB3-207ENST00000542786 SLC27A2O14975 620 aa17.06■□□□□ 0.32
LDB3-207ENST00000542786 CHGBP05060 677 aa17.06■□□□□ 0.32
LDB3-207ENST00000542786 AK2P54819 239 aa17.06■□□□□ 0.32
LDB3-207ENST00000542786 CTSWP56202 376 aa17.06■□□□□ 0.32
LDB3-207ENST00000542786 TBC1D2BQ9UPU7 963 aa17.06■□□□□ 0.32
LDB3-207ENST00000542786 DNAJC2Q99543 621 aaKnown RBP17.05■□□□□ 0.32
LDB3-207ENST00000542786 RIPOR2Q9Y4F9 1068 aa17.05■□□□□ 0.32
LDB3-207ENST00000542786 TSGA10IPQ3SY00 556 aa17.05■□□□□ 0.32
LDB3-207ENST00000542786 DDX46Q7L014 1031 aaKnown RBP17.05■□□□□ 0.32
LDB3-207ENST00000542786 GREM2Q9H772 168 aa17.05■□□□□ 0.32
LDB3-207ENST00000542786 CEP126Q9P2H0 1117 aa17.05■□□□□ 0.32
LDB3-207ENST00000542786 TAF6LQ9Y6J9 622 aa17.05■□□□□ 0.32
LDB3-207ENST00000542786 SH3TC1Q8TE82 1336 aa17.05■□□□□ 0.32
LDB3-207ENST00000542786 THSD7AQ9UPZ6 1657 aa17.05■□□□□ 0.32
LDB3-207ENST00000542786 UBAP1LF5GYI3 381 aa17.04■□□□□ 0.32
LDB3-207ENST00000542786 IRS4O14654 1257 aaPredicted RBP17.04■□□□□ 0.32
LDB3-207ENST00000542786 CAMTA2O94983 1202 aa17.04■□□□□ 0.32
LDB3-207ENST00000542786 CPA1P15085 419 aa17.04■□□□□ 0.32
LDB3-207ENST00000542786 CASTP20810 708 aaKnown RBP17.04■□□□□ 0.32
LDB3-207ENST00000542786 ATP6V1AP38606 617 aa17.04■□□□□ 0.32
LDB3-207ENST00000542786 IFIT5Q13325 482 aaKnown RBP17.04■□□□□ 0.32
LDB3-207ENST00000542786 COL9A3Q14050 684 aaPredicted RBP17.04■□□□□ 0.32
LDB3-207ENST00000542786 VPS53Q5VIR6 699 aa17.04■□□□□ 0.32
LDB3-207ENST00000542786 NOL8Q76FK4 1167 aaKnown RBP17.04■□□□□ 0.32
LDB3-207ENST00000542786 JAKMIP1Q96N16 626 aaKnown RBP17.04■□□□□ 0.32
LDB3-207ENST00000542786 NEUROD6Q96NK8 337 aa17.04■□□□□ 0.32
LDB3-207ENST00000542786 KCNQ2O43526 872 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 ADORA1P30542 326 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 FNBP4Q8N3X1 1017 aaPredicted RBP17.03■□□□□ 0.32
LDB3-207ENST00000542786 VGLL2Q8N8G2 317 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 ARXQ96QS3 562 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 PAG1Q9NWQ8 432 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 BCORQ6W2J9 1755 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 BRD1O95696 1058 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 CCDC85AQ96PX6 553 aaPredicted RBP17.03■□□□□ 0.32
LDB3-207ENST00000542786 TRMT112Q9UI30 125 aaKnown RBP17.03■□□□□ 0.32
LDB3-207ENST00000542786 LIMCH1Q9UPQ0 1083 aa17.03■□□□□ 0.32
LDB3-207ENST00000542786 CCDC9Q9Y3X0 531 aaKnown RBP17.03■□□□□ 0.32
LDB3-207ENST00000542786 PDE8AO60658 829 aa17.02■□□□□ 0.32
LDB3-207ENST00000542786 PTMSP20962 102 aa17.02■□□□□ 0.32
LDB3-207ENST00000542786 ITGA6P23229 1130 aa17.02■□□□□ 0.32
LDB3-207ENST00000542786 ZMYM1Q5SVZ6 1142 aa17.02■□□□□ 0.32
LDB3-207ENST00000542786 SMARCC1Q92922 1105 aaPredicted RBP17.02■□□□□ 0.32
LDB3-207ENST00000542786 AK7Q96M32 723 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms