RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 CCDC146Q8IYE0 955 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 SUPT20HQ8NEM7 779 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 NLRP3Q96P20 1036 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 TAF1P21675 1872 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 RAD17O75943 681 aa11.35□□□□□ -0.59
CLSTN3-212ENST00000541770 NTSR2O95665 410 aa11.35□□□□□ -0.59
CLSTN3-212ENST00000541770 BRPF1P55201 1214 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-212ENST00000541770 DPP8Q6V1X1 898 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-212ENST00000541770 ZNRF3Q9ULT6 936 aa11.35□□□□□ -0.59
CLSTN3-212ENST00000541770 IBTKQ9P2D0 1353 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 RIPK4P57078 832 aa11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 LMOD3Q0VAK6 560 aa11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 NCBP3Q53F19 620 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 CDC37L1Q7L3B6 337 aa11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 ZNF34Q8IZ26 560 aa11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 ATP6V0A2Q9Y487 856 aa11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 POLR2AP24928 1970 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 ABCC4O15439 1325 aa11.34□□□□□ -0.59
CLSTN3-212ENST00000541770 ANKRD36CQ5JPF3 1778 aa11.33□□□□□ -0.59
CLSTN3-212ENST00000541770 AKAP11Q9UKA4 1901 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 APAF1O14727 1248 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 HUNKP57058 714 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 TNIP1Q15025 636 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 USP48Q86UV5 1035 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 FAM9BQ8IZU0 186 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 MPNDQ8N594 471 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 TRPM4Q8TD43 1214 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 ZIC5Q96T25 663 aa11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 THUMPD2Q9BTF0 503 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 UTP14AQ9BVJ6 771 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-212ENST00000541770 SHTN1A0MZ66 631 aa11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 H7C1D1 291 aa11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 EIF2S2P20042 333 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 HIRAP54198 1017 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 SOX10P56693 466 aa11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 EIF4A1P60842 406 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 NOGQ13253 232 aa11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 DLK2Q6UY11 383 aa11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 GIGYF2Q6Y7W6 1299 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 HHIPL1Q96JK4 782 aa11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 VPS33BQ9H267 617 aa11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 CNOT7Q9UIV1 285 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-212ENST00000541770 PARP10Q53GL7 1025 aa11.31□□□□□ -0.6
CLSTN3-212ENST00000541770 RBM26Q5T8P6 1007 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-212ENST00000541770 MICALL2Q8IY33 904 aa11.31□□□□□ -0.6
CLSTN3-212ENST00000541770 ZC3H15Q8WU90 426 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-212ENST00000541770 ZNF428Q96B54 188 aa11.31□□□□□ -0.6
CLSTN3-212ENST00000541770 TRIM35Q9UPQ4 493 aa11.31□□□□□ -0.6
CLSTN3-212ENST00000541770 ZBTB12Q9Y330 459 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-212ENST00000541770 ANXA1P04083 346 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 HCLS1P14317 486 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 KIAA2012Q0VF49 1180 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 NEUROD2Q15784 382 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 CCDC27Q2M243 656 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 DDX46Q7L014 1031 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 SAMD7Q7Z3H4 446 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 SP8Q8IXZ3 490 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 RTFDC1Q9BY42 306 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 PGAP2Q9UHJ9 254 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 CDHR2Q9BYE9 1310 aa11.3□□□□□ -0.6
CLSTN3-212ENST00000541770 YDJCA8MPS7 323 aa11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 RIMBP2O15034 1052 aa11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 BBOX1O75936 387 aa11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 AIMP1Q12904 312 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 TBC1D10BQ4KMP7 808 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 RGMBQ6NW40 437 aa11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 C2orf69Q8N8R5 385 aa11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 NECTIN2Q92692 538 aa11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 DBNDD1Q9H9R9 158 aa11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 GBA2Q9HCG7 927 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-212ENST00000541770 ADM5C9JUS6 153 aa11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 TRPA1O75762 1119 aa11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 ZNF157P51786 506 aaPredicted RBP11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 KIF23Q02241 960 aaPredicted RBP11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 SLC10A5Q5PT55 438 aa11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 KRT26Q7Z3Y9 468 aa11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 DCPSQ96C86 337 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 BABAM1Q9NWV8 329 aa11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 TRMT112Q9UI30 125 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 TSPYL4Q9UJ04 414 aa11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 ERBB4Q15303 1308 aa11.28□□□□□ -0.6
CLSTN3-212ENST00000541770 DDX60Q8IY21 1712 aaKnown RBP11.27□□□□□ -0.61
CLSTN3-212ENST00000541770 C6orf229H3BNL8 230 aa11.27□□□□□ -0.61
CLSTN3-212ENST00000541770 PSMD14O00487 310 aa11.27□□□□□ -0.61
CLSTN3-212ENST00000541770 GRAPQ13588 217 aa11.27□□□□□ -0.61
CLSTN3-212ENST00000541770 WASHC4Q2M389 1173 aa11.27□□□□□ -0.61
CLSTN3-212ENST00000541770 GRAPLQ8TC17 118 aaPredicted RBP11.27□□□□□ -0.61
CLSTN3-212ENST00000541770 NSFL1CQ9UNZ2 370 aaKnown RBP11.27□□□□□ -0.61
CLSTN3-212ENST00000541770 DUOX1Q9NRD9 1551 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 CALD1Q05682 793 aaKnown RBP11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 DOK7Q18PE1 504 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 PROSER3Q2NL68 480 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 HSP90AB3PQ58FF7 597 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 COPS6Q7L5N1 327 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 NLRP10Q86W26 655 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 WWC1Q8IX03 1113 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 CCDC102AQ96A19 550 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 RNF186Q9NXI6 227 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 LRRC37AA6NMS7 1700 aa11.26□□□□□ -0.61
CLSTN3-212ENST00000541770 FAM155AB1AL88 458 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms