RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TRIM28Q13263 835 aaKnown RBP17.57■□□□□ 0.4
CLIP1-216ENST00000541410 SLFNL1Q499Z3 407 aa17.57■□□□□ 0.4
CLIP1-216ENST00000541410 RUFY2Q8WXA3 655 aa17.57■□□□□ 0.4
CLIP1-216ENST00000541410 SNX14Q9Y5W7 946 aa17.57■□□□□ 0.4
CLIP1-216ENST00000541410 UBN2Q6ZU65 1347 aa17.56■□□□□ 0.4
CLIP1-216ENST00000541410 PALLDQ8WX93 1383 aa17.56■□□□□ 0.4
CLIP1-216ENST00000541410 ATP5JP18859 108 aa17.56■□□□□ 0.4
CLIP1-216ENST00000541410 PKP1Q13835 747 aa17.56■□□□□ 0.4
CLIP1-216ENST00000541410 TAF7LQ5H9L4 462 aa17.56■□□□□ 0.4
CLIP1-216ENST00000541410 SSFA2P28290 1259 aa17.55■□□□□ 0.4
CLIP1-216ENST00000541410 MCM4P33991 863 aa17.55■□□□□ 0.4
CLIP1-216ENST00000541410 IL15P40933 162 aaPredicted RBP17.55■□□□□ 0.4
CLIP1-216ENST00000541410 PRPF40BQ6NWY9 871 aaKnown RBP17.55■□□□□ 0.4
CLIP1-216ENST00000541410 GREM2Q9H772 168 aa17.55■□□□□ 0.4
CLIP1-216ENST00000541410 CCDC87Q9NVE4 849 aa17.55■□□□□ 0.4
CLIP1-216ENST00000541410 TMX3Q96JJ7 454 aa17.55■□□□□ 0.4
CLIP1-216ENST00000541410 A0A1B0GUL7 405 aa17.54■□□□□ 0.4
CLIP1-216ENST00000541410 IRS4O14654 1257 aaPredicted RBP17.54■□□□□ 0.4
CLIP1-216ENST00000541410 ANAPC15P60006 121 aa17.54■□□□□ 0.4
CLIP1-216ENST00000541410 ZNF589Q86UQ0 364 aaPredicted RBP17.54■□□□□ 0.4
CLIP1-216ENST00000541410 EIF5P55010 431 aaKnown RBP17.54■□□□□ 0.4
CLIP1-216ENST00000541410 IFIT5Q13325 482 aaKnown RBP17.54■□□□□ 0.4
CLIP1-216ENST00000541410 SEC62Q99442 399 aaKnown RBP17.54■□□□□ 0.4
CLIP1-216ENST00000541410 ANKRD36CQ5JPF3 1778 aa17.54■□□□□ 0.4
CLIP1-216ENST00000541410 JCADQ9P266 1359 aa17.54■□□□□ 0.4
CLIP1-216ENST00000541410 RAB3GAP1Q15042 981 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 ADCK5Q3MIX3 580 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 TTLL11Q8NHH1 800 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 USP21Q9UK80 565 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 GOLIM4O00461 696 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 ITGA6P23229 1130 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 ADORA1P30542 326 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 KCNJ4P48050 445 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 HSP90AB3PQ58FF7 597 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 CCDC129Q6ZRS4 1044 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 CEP126Q9P2H0 1117 aa17.53■□□□□ 0.4
CLIP1-216ENST00000541410 DTNBO60941 627 aa17.52■□□□□ 0.4
CLIP1-216ENST00000541410 HCLS1P14317 486 aaPredicted RBP17.52■□□□□ 0.4
CLIP1-216ENST00000541410 VPS72Q15906 364 aa17.52■□□□□ 0.4
CLIP1-216ENST00000541410 CCDC171Q6TFL3 1326 aa17.52■□□□□ 0.4
CLIP1-216ENST00000541410 CSF1RP07333 972 aa17.52■□□□□ 0.39
CLIP1-216ENST00000541410 COL9A3Q14050 684 aaPredicted RBP17.52■□□□□ 0.39
CLIP1-216ENST00000541410 GSE1Q14687 1217 aa17.52■□□□□ 0.39
CLIP1-216ENST00000541410 RBM8AQ9Y5S9 174 aaKnown RBP17.52■□□□□ 0.39
CLIP1-216ENST00000541410 MYH3P11055 1940 aa17.52■□□□□ 0.39
CLIP1-216ENST00000541410 CASTP20810 708 aaKnown RBP17.51■□□□□ 0.39
CLIP1-216ENST00000541410 CTSWP56202 376 aa17.51■□□□□ 0.39
CLIP1-216ENST00000541410 FOXD4L5Q5VV16 416 aaPredicted RBP17.51■□□□□ 0.39
CLIP1-216ENST00000541410 SUSD4Q5VX71 490 aa17.51■□□□□ 0.39
CLIP1-216ENST00000541410 FOXD4L4Q8WXT5 416 aaPredicted RBP17.51■□□□□ 0.39
CLIP1-216ENST00000541410 HAUS7Q99871 368 aa17.51■□□□□ 0.39
CLIP1-216ENST00000541410 SNRKQ9NRH2 765 aa17.51■□□□□ 0.39
CLIP1-216ENST00000541410 CIZ1Q9ULV3 898 aaPredicted RBP17.51■□□□□ 0.39
CLIP1-216ENST00000541410 ZNF34Q8IZ26 560 aa17.51■□□□□ 0.39
CLIP1-216ENST00000541410 PLA2G12BQ9BX93 195 aa17.51■□□□□ 0.39
CLIP1-216ENST00000541410 TAF6LQ9Y6J9 622 aa17.51■□□□□ 0.39
CLIP1-216ENST00000541410 ZNF609O15014 1411 aa17.5■□□□□ 0.39
CLIP1-216ENST00000541410 EP400Q96L91 3159 aa17.5■□□□□ 0.39
CLIP1-216ENST00000541410 ERVV-1B6SEH8 477 aa17.5■□□□□ 0.39
CLIP1-216ENST00000541410 CIAO1O76071 339 aa17.5■□□□□ 0.39
CLIP1-216ENST00000541410 LDHAL6AQ6ZMR3 332 aa17.5■□□□□ 0.39
CLIP1-216ENST00000541410 GZF1Q9H116 711 aaPredicted RBP17.5■□□□□ 0.39
CLIP1-216ENST00000541410 HIP1O00291 1037 aa17.5■□□□□ 0.39
CLIP1-216ENST00000541410 JAKMIP1Q96N16 626 aaKnown RBP17.5■□□□□ 0.39
CLIP1-216ENST00000541410 CDHR2Q9BYE9 1310 aa17.49■□□□□ 0.39
CLIP1-216ENST00000541410 FKBP4Q02790 459 aaKnown RBP eCLIP17.49■□□□□ 0.39
CLIP1-216ENST00000541410 GORABQ5T7V8 394 aa17.49■□□□□ 0.39
CLIP1-216ENST00000541410 LINC00116Q8NCU8 138 aa17.49■□□□□ 0.39
CLIP1-216ENST00000541410 CAMTA2O94983 1202 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 IFIT1P09914 478 aaKnown RBP17.48■□□□□ 0.39
CLIP1-216ENST00000541410 NECTIN1Q15223 517 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 METTL24Q5JXM2 366 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 MEX3CQ5U5Q3 659 aaKnown RBP17.48■□□□□ 0.39
CLIP1-216ENST00000541410 FNBP4Q8N3X1 1017 aaPredicted RBP17.48■□□□□ 0.39
CLIP1-216ENST00000541410 XAGE2Q96GT9 111 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 CHAMP1Q96JM3 812 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 CNNM1Q9NRU3 951 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 PAG1Q9NWQ8 432 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 AK2P54819 239 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 CREB3L3Q68CJ9 461 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 PI16Q6UXB8 463 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 HELBQ8NG08 1087 aaPredicted RBP17.48■□□□□ 0.39
CLIP1-216ENST00000541410 MAP4K1Q92918 833 aa17.48■□□□□ 0.39
CLIP1-216ENST00000541410 NIP7Q9Y221 180 aaKnown RBP eCLIP17.48■□□□□ 0.39
CLIP1-216ENST00000541410 ANKRD18BA2A2Z9 1011 aa17.47■□□□□ 0.39
CLIP1-216ENST00000541410 EPB41L2O43491 1005 aaKnown RBP17.47■□□□□ 0.39
CLIP1-216ENST00000541410 PDE8AO60658 829 aa17.47■□□□□ 0.39
CLIP1-216ENST00000541410 TCEANC2Q96MN5 208 aa17.47■□□□□ 0.39
CLIP1-216ENST00000541410 SCARF1Q14162 830 aa17.47■□□□□ 0.39
CLIP1-216ENST00000541410 GPR108Q9NPR9 543 aa17.47■□□□□ 0.39
CLIP1-216ENST00000541410 MED23Q9ULK4 1368 aa17.47■□□□□ 0.39
CLIP1-216ENST00000541410 HSPA1LP34931 641 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 KBTBD3Q8NAB2 608 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 IL17RAQ96F46 866 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 RIPOR2Q9Y4F9 1068 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 SNAP23O00161 211 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 SLC27A2O14975 620 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 BICDL1Q6ZP65 573 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 SMARCC1Q92922 1105 aaPredicted RBP17.46■□□□□ 0.39
CLIP1-216ENST00000541410 TTC14Q96N46 770 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms