RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CCDC178Q5BJE1 867 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 PCDHB15Q9Y5E8 787 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 PAG1Q9NWQ8 432 aa16.37■□□□□ 0.21
USP3-204ENST00000540797 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
USP3-204ENST00000540797 SLC26A6Q9BXS9 759 aa16.37■□□□□ 0.21
USP3-204ENST00000540797 UBA5Q9GZZ9 404 aa16.37■□□□□ 0.21
USP3-204ENST00000540797 PLEKHG3A1L390 1219 aa16.37■□□□□ 0.21
USP3-204ENST00000540797 PPP4R3BQ5MIZ7 849 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 CNNM2Q9H8M5 875 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 VEZTQ9HBM0 779 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.36■□□□□ 0.212e-7■■■□□ 16.1
USP3-204ENST00000540797 MAGEB6P1A0A0J9YX57 407 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 PARP10Q53GL7 1025 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 BABAM1Q9NWV8 329 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 PLBD2Q8NHP8 589 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 SLC52A2Q9HAB3 445 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 GJB2P29033 226 aa16.36■□□□□ 0.21
USP3-204ENST00000540797 PER1O15534 1290 aaPredicted RBP16.35■□□□□ 0.21
USP3-204ENST00000540797 RBM26Q5T8P6 1007 aaKnown RBP16.35■□□□□ 0.21
USP3-204ENST00000540797 TSG101Q99816 390 aa16.35■□□□□ 0.21
USP3-204ENST00000540797 TFCP2Q12800 502 aa16.35■□□□□ 0.21
USP3-204ENST00000540797 IFIT1BQ5T764 474 aaKnown RBP16.35■□□□□ 0.21
USP3-204ENST00000540797 FAM89AQ96GI7 184 aa16.35■□□□□ 0.21
USP3-204ENST00000540797 LGR6Q9HBX8 967 aa16.35■□□□□ 0.21
USP3-204ENST00000540797 KLF18A0A0U1RQI7 1052 aa16.35■□□□□ 0.21
USP3-204ENST00000540797 BICC1Q9H694 974 aaKnown RBP16.35■□□□□ 0.21
USP3-204ENST00000540797 TRIM21P19474 475 aaKnown RBP16.35■□□□□ 0.21
USP3-204ENST00000540797 TMTC2Q8N394 836 aa16.35■□□□□ 0.21
USP3-204ENST00000540797 BRF1Q92994 677 aa16.35■□□□□ 0.21
USP3-204ENST00000540797 PLCG2P16885 1265 aa16.34■□□□□ 0.21
USP3-204ENST00000540797 TNNT3P45378 269 aaPredicted RBP16.34■□□□□ 0.21
USP3-204ENST00000540797 HSP90B2PQ58FF3 399 aa16.34■□□□□ 0.21
USP3-204ENST00000540797 KLHL10Q6JEL2 608 aa16.34■□□□□ 0.21
USP3-204ENST00000540797 CEP85Q6P2H3 762 aa16.34■□□□□ 0.21
USP3-204ENST00000540797 PPFIA3O75145 1194 aa16.34■□□□□ 0.21
USP3-204ENST00000540797 TCP11L1Q9NUJ3 509 aa16.34■□□□□ 0.21
USP3-204ENST00000540797 RBM8AQ9Y5S9 174 aaKnown RBP16.34■□□□□ 0.21
USP3-204ENST00000540797 SH3TC1Q8TE82 1336 aa16.34■□□□□ 0.21
USP3-204ENST00000540797 NF2P35240 595 aa16.33■□□□□ 0.21
USP3-204ENST00000540797 MPNDQ8N594 471 aa16.33■□□□□ 0.21
USP3-204ENST00000540797 ZBTB43O43298 467 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 CFAP100Q494V2 611 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 MPHOSPH6Q99547 160 aaKnown RBP16.33■□□□□ 0.2
USP3-204ENST00000540797 CCDC87Q9NVE4 849 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 TTC41PQ6P2S7 1318 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 LDHBP07195 334 aaKnown RBP16.33■□□□□ 0.2
USP3-204ENST00000540797 DESP17661 470 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 FBXO3Q9UK99 471 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 TEX35Q5T0J7 233 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 TRMT1LQ7Z2T5 733 aaKnown RBP16.33■□□□□ 0.2
USP3-204ENST00000540797 CALML4Q96GE6 196 aa16.33■□□□□ 0.2
USP3-204ENST00000540797 TNNQ9UQP3 1299 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 TRAF1Q13077 416 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 C16orf71Q8IYS4 520 aaPredicted RBP16.32■□□□□ 0.2
USP3-204ENST00000540797 METTL22Q9BUU2 404 aaPredicted RBP16.32■□□□□ 0.2
USP3-204ENST00000540797 RNF113AO15541 343 aaKnown RBP16.32■□□□□ 0.2
USP3-204ENST00000540797 HOXB7P09629 217 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 GNAT2P19087 354 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 FILIP1Q7Z7B0 1213 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 CNNM3Q8NE01 707 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 ESYT1Q9BSJ8 1104 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 KIF20AO95235 890 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 A1BGP04217 495 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 HCLS1P14317 486 aaPredicted RBP16.32■□□□□ 0.2
USP3-204ENST00000540797 MAGEB6Q8N7X4 407 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 ANO10Q9NW15 660 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 NMIQ13287 307 aaPredicted RBP16.32■□□□□ 0.2
USP3-204ENST00000540797 SAMM50Q9Y512 469 aa16.32■□□□□ 0.2
USP3-204ENST00000540797 SYCE3A1L190 88 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 GRM1Q13255 1194 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 G2E3Q7L622 706 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 MIGA1Q8NAN2 632 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 ERCC4Q92889 916 aaPredicted RBP16.31■□□□□ 0.2
USP3-204ENST00000540797 LRRC2Q9BYS8 371 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 TBC1D2Q9BYX2 928 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 STX6O43752 255 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 CCDC181Q5TID7 509 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 MCM9Q9NXL9 1143 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 GNAQP50148 359 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 HSP90AA2PQ14568 343 aaPredicted RBP16.31■□□□□ 0.2
USP3-204ENST00000540797 DNAI2Q9GZS0 605 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 GRPEL1Q9HAV7 217 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 TFIP11Q9UBB9 837 aaKnown RBP16.31■□□□□ 0.2
USP3-204ENST00000540797 JAG2Q9Y219 1238 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 POTEJP0CG39 1038 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 FSIP1Q8NA03 581 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 CCDC191Q8NCU4 936 aa16.31■□□□□ 0.2
USP3-204ENST00000540797 ZNF397Q8NF99 534 aaPredicted RBP16.31■□□□□ 0.2
USP3-204ENST00000540797 LIG1P18858 919 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 NPC1L1Q9UHC9 1359 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 APBA3O96018 575 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 ITGA6P23229 1130 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 RTN1Q16799 776 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 DNAJC10Q8IXB1 793 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 DCTPP1Q9H773 170 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 TMEM94Q12767 1356 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 SSFA2P28290 1259 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 FKBP15Q5T1M5 1219 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 MYO5CQ9NQX4 1742 aa16.3■□□□□ 0.2
USP3-204ENST00000540797 UFL1O94874 794 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 230.5 ms