RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ZBTB42B2RXF5 422 aa7.55□□□□□ -1.2
VPS13A-213ENST00000539950 K7ELQ4 463 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-213ENST00000539950 MAP3K6O95382 1288 aa7.55□□□□□ -1.2
VPS13A-213ENST00000539950 TRIM28Q13263 835 aaKnown RBP7.55□□□□□ -1.2
VPS13A-213ENST00000539950 RGL4Q8IZJ4 473 aa7.55□□□□□ -1.2
VPS13A-213ENST00000539950 CCDC97Q96F63 343 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-213ENST00000539950 CXXC1Q9P0U4 656 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-213ENST00000539950 GTF3C3Q9Y5Q9 886 aa7.55□□□□□ -1.2
VPS13A-213ENST00000539950 RARAP10276 462 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 AFF1P51825 1210 aaKnown RBP7.54□□□□□ -1.2
VPS13A-213ENST00000539950 MLLT1Q03111 559 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-213ENST00000539950 DOC2BQ14184 412 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 GRIK4Q16099 956 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 TRAPPC3LQ5T215 181 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 DHX32Q7L7V1 743 aaKnown RBP7.54□□□□□ -1.2
VPS13A-213ENST00000539950 FAM35AQ86V20 835 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 ETFBKMTQ8IXQ9 262 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 CMTR1Q8N1G2 835 aaKnown RBP7.54□□□□□ -1.2
VPS13A-213ENST00000539950 PBXIP1Q96AQ6 731 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 SLAIN2Q9P270 581 aa7.54□□□□□ -1.2
VPS13A-213ENST00000539950 CPB1P15086 417 aa7.53□□□□□ -1.2
VPS13A-213ENST00000539950 NAA30Q147X3 362 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-213ENST00000539950 C16orf46Q6P387 395 aa7.53□□□□□ -1.2
VPS13A-213ENST00000539950 TRPM4Q8TD43 1214 aa7.53□□□□□ -1.2
VPS13A-213ENST00000539950 COL26A1Q96A83 441 aa7.53□□□□□ -1.2
VPS13A-213ENST00000539950 C11orf16Q9NQ32 467 aa7.53□□□□□ -1.2
VPS13A-213ENST00000539950 SERPINA10Q9UK55 444 aa7.53□□□□□ -1.2
VPS13A-213ENST00000539950 KCNMB2Q9Y691 235 aa7.53□□□□□ -1.2
VPS13A-213ENST00000539950 TNFRSF10BO14763 440 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 XYLBO75191 536 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 RGS9O75916 674 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-213ENST00000539950 APBA3O96018 575 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 EGFRP00533 1210 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 GATA4P43694 442 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 PLAURQ03405 335 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 PERM1Q5SV97 790 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 LPIN3Q9BQK8 851 aa7.52□□□□□ -1.21
VPS13A-213ENST00000539950 A0A0A0MRY4 1105 aa7.51□□□□□ -1.21
VPS13A-213ENST00000539950 BRD2P25440 801 aaKnown RBP7.51□□□□□ -1.21
VPS13A-213ENST00000539950 HFE2Q6ZVN8 426 aa7.51□□□□□ -1.21
VPS13A-213ENST00000539950 ILDR2Q71H61 639 aa7.51□□□□□ -1.21
VPS13A-213ENST00000539950 CLP1Q92989 425 aaKnown RBP7.51□□□□□ -1.21
VPS13A-213ENST00000539950 GPLD1P80108 840 aa7.5□□□□□ -1.21
VPS13A-213ENST00000539950 TRIP4Q15650 581 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-213ENST00000539950 GRIK5Q16478 980 aa7.5□□□□□ -1.21
VPS13A-213ENST00000539950 PCSK7Q16549 785 aa7.5□□□□□ -1.21
VPS13A-213ENST00000539950 DMRTC2Q8IXT2 367 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-213ENST00000539950 TLR7Q9NYK1 1049 aaKnown RBP7.5□□□□□ -1.21
VPS13A-213ENST00000539950 MMP20O60882 483 aa7.49□□□□□ -1.21
VPS13A-213ENST00000539950 FRRS1LQ9P0K9 344 aa7.49□□□□□ -1.21
VPS13A-213ENST00000539950 PTCD1O75127 700 aaKnown RBP7.48□□□□□ -1.21
VPS13A-213ENST00000539950 ELNP15502 786 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 SELPP16109 830 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 ITGB7P26010 798 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 NRLP54845 237 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 MSL1Q68DK7 614 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 ELMSAN1Q6PJG2 1045 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 SHISA2Q6UWI4 295 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 FMR1NBQ8N0W7 255 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-213ENST00000539950 NACC1Q96RE7 527 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 SMG9Q9H0W8 520 aaKnown RBP7.48□□□□□ -1.21
VPS13A-213ENST00000539950 TPSG1Q9NRR2 321 aa7.48□□□□□ -1.21
VPS13A-213ENST00000539950 J3QW42 95 aa7.47□□□□□ -1.21
VPS13A-213ENST00000539950 ZBTB39O15060 712 aa7.47□□□□□ -1.21
VPS13A-213ENST00000539950 RAC1P63000 192 aa7.47□□□□□ -1.21
VPS13A-213ENST00000539950 CCDC82Q8N4S0 544 aa7.47□□□□□ -1.21
VPS13A-213ENST00000539950 SEPT3Q9UH03 358 aa7.47□□□□□ -1.21
VPS13A-213ENST00000539950 PSAPP07602 524 aa7.46□□□□□ -1.22
VPS13A-213ENST00000539950 EIF2AK2P19525 551 aaKnown RBP7.46□□□□□ -1.22
VPS13A-213ENST00000539950 ATP2B4P23634 1241 aa7.46□□□□□ -1.22
VPS13A-213ENST00000539950 ZAP70P43403 619 aa7.46□□□□□ -1.22
VPS13A-213ENST00000539950 NSUN5Q96P11 429 aaKnown RBP7.46□□□□□ -1.22
VPS13A-213ENST00000539950 SEMA6BQ9H3T3 888 aa7.46□□□□□ -1.22
VPS13A-213ENST00000539950 C1orf115Q9H7X2 142 aa7.46□□□□□ -1.22
VPS13A-213ENST00000539950 LOC102724428A0A0B4J2F2 783 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 C9orf172C9J069 976 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 ARID4AP29374 1257 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-213ENST00000539950 SIK1P57059 783 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 ADGRE1Q14246 886 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 MBTPS1Q14703 1052 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 RSPO4Q2I0M5 234 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-213ENST00000539950 NLRP13Q86W25 1043 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 TTC9Q92623 222 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 STIM2Q9P246 746 aa7.45□□□□□ -1.22
VPS13A-213ENST00000539950 UBAP1LF5GYI3 381 aa7.44□□□□□ -1.22
VPS13A-213ENST00000539950 SOX18P35713 384 aa7.44□□□□□ -1.22
VPS13A-213ENST00000539950 SCNN1AP37088 669 aa7.44□□□□□ -1.22
VPS13A-213ENST00000539950 NKAPLQ5M9Q1 402 aa7.44□□□□□ -1.22
VPS13A-213ENST00000539950 WFDC8Q8IUA0 241 aa7.44□□□□□ -1.22
VPS13A-213ENST00000539950 PIK3R5Q8WYR1 880 aa7.44□□□□□ -1.22
VPS13A-213ENST00000539950 PLD4Q96BZ4 506 aa7.44□□□□□ -1.22
VPS13A-213ENST00000539950 LENG1Q96BZ8 264 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-213ENST00000539950 HOXD8P13378 290 aaPredicted RBP7.43□□□□□ -1.22
VPS13A-213ENST00000539950 GPR152Q8TDT2 470 aa7.43□□□□□ -1.22
VPS13A-213ENST00000539950 FBXO11Q86XK2 927 aa7.42□□□□□ -1.22
VPS13A-213ENST00000539950 DTWD1Q8N5C7 304 aa7.42□□□□□ -1.22
VPS13A-213ENST00000539950 FAM13BQ9NYF5 915 aa7.42□□□□□ -1.22
VPS13A-213ENST00000539950 USP21Q9UK80 565 aa7.42□□□□□ -1.22
VPS13A-213ENST00000539950 TMEM88BA6NKF7 163 aa7.41□□□□□ -1.22
VPS13A-213ENST00000539950 DEAF1O75398 565 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms