RNA–Protein interactions for RNA: ENST00000538838.5

TMEM260-202, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best) BASIC

Gene TMEM260, Length 1,638 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-202ENST00000538838 CHMP3Q9Y3E7 222 aa29.38■■■□□ 2.29
TMEM260-202ENST00000538838 COL4A1P02462 1669 aa29.36■■■□□ 2.29
TMEM260-202ENST00000538838 PNMA6EA0A0J9YXQ4 647 aa29.36■■■□□ 2.29
TMEM260-202ENST00000538838 CSF1RP07333 972 aa29.36■■■□□ 2.29
TMEM260-202ENST00000538838 FAM161AQ3B820 660 aa29.36■■■□□ 2.29
TMEM260-202ENST00000538838 DLEC1Q9Y238 1755 aa29.36■■■□□ 2.29
TMEM260-202ENST00000538838 KIAA1551Q9HCM1 1747 aa29.36■■■□□ 2.29
TMEM260-202ENST00000538838 MTX1Q13505 466 aa29.35■■■□□ 2.29
TMEM260-202ENST00000538838 SIRT2Q8IXJ6 389 aa29.35■■■□□ 2.29
TMEM260-202ENST00000538838 CACNA1SQ13698 1873 aa29.34■■■□□ 2.29
TMEM260-202ENST00000538838 GREM2Q9H772 168 aa29.34■■■□□ 2.29
TMEM260-202ENST00000538838 SRGAP3O43295 1099 aa29.34■■■□□ 2.29
TMEM260-202ENST00000538838 ATP8B2P98198 1209 aa29.34■■■□□ 2.29
TMEM260-202ENST00000538838 SF3B3Q15393 1217 aaKnown RBP29.34■■■□□ 2.29
TMEM260-202ENST00000538838 RPAP2Q8IXW5 612 aaPredicted RBP29.34■■■□□ 2.29
TMEM260-202ENST00000538838 CCDC152Q4G0S7 254 aa29.33■■■□□ 2.29
TMEM260-202ENST00000538838 ERICH6BQ5W0A0 696 aa29.33■■■□□ 2.29
TMEM260-202ENST00000538838 PDE6BP35913 854 aa29.32■■■□□ 2.28
TMEM260-202ENST00000538838 CRY2Q49AN0 593 aa29.31■■■□□ 2.28
TMEM260-202ENST00000538838 RTL9Q8NET4 1388 aa29.31■■■□□ 2.28
TMEM260-202ENST00000538838 KLRG2A4D1S0 409 aaPredicted RBP29.31■■■□□ 2.28
TMEM260-202ENST00000538838 ITGA6P23229 1130 aa29.3■■■□□ 2.28
TMEM260-202ENST00000538838 SEC31BQ9NQW1 1179 aa29.3■■■□□ 2.28
TMEM260-202ENST00000538838 LRP5O75197 1615 aa29.3■■■□□ 2.28
TMEM260-202ENST00000538838 POLA2Q14181 598 aa29.29■■■□□ 2.28
TMEM260-202ENST00000538838 SSH3Q8TE77 659 aa29.29■■■□□ 2.28
TMEM260-202ENST00000538838 RFX5P48382 616 aaPredicted RBP29.28■■■□□ 2.28
TMEM260-202ENST00000538838 IFIT5Q13325 482 aaKnown RBP29.28■■■□□ 2.28
TMEM260-202ENST00000538838 CCDC57Q2TAC2 916 aa29.28■■■□□ 2.28
TMEM260-202ENST00000538838 KLHL34Q8N239 644 aa29.28■■■□□ 2.28
TMEM260-202ENST00000538838 RPGRQ92834 1020 aaKnown RBP29.28■■■□□ 2.28
TMEM260-202ENST00000538838 C2CD5Q86YS7 1000 aa29.27■■■□□ 2.28
TMEM260-202ENST00000538838 KLHDC4Q8TBB5 520 aa29.27■■■□□ 2.28
TMEM260-202ENST00000538838 PPP1R1BQ9UD71 204 aaPredicted RBP29.27■■■□□ 2.28
TMEM260-202ENST00000538838 ANKRD18BA2A2Z9 1011 aa29.27■■■□□ 2.28
TMEM260-202ENST00000538838 HMMRO75330 724 aa29.27■■■□□ 2.28
TMEM260-202ENST00000538838 SRGNP10124 158 aa29.27■■■□□ 2.28
TMEM260-202ENST00000538838 CHRNA5P30532 468 aa29.27■■■□□ 2.28
TMEM260-202ENST00000538838 GTF3C3Q9Y5Q9 886 aa29.27■■■□□ 2.28
TMEM260-202ENST00000538838 ZNF594Q96JF6 807 aaPredicted RBP29.26■■■□□ 2.27
TMEM260-202ENST00000538838 PA2G4Q9UQ80 394 aaKnown RBP29.26■■■□□ 2.27
TMEM260-202ENST00000538838 DDX46Q7L014 1031 aaKnown RBP29.25■■■□□ 2.27
TMEM260-202ENST00000538838 BRCA1P38398 1863 aaKnown RBP29.24■■■□□ 2.27
TMEM260-202ENST00000538838 H0YIN7 160 aa29.23■■■□□ 2.27
TMEM260-202ENST00000538838 PTPN12Q05209 780 aaKnown RBP29.23■■■□□ 2.27
TMEM260-202ENST00000538838 HDAC1Q13547 482 aaPredicted RBP29.23■■■□□ 2.27
TMEM260-202ENST00000538838 PPP4R2Q9NY27 417 aa29.23■■■□□ 2.27
TMEM260-202ENST00000538838 A0A1B0GUL6 1792 aa29.23■■■□□ 2.27
TMEM260-202ENST00000538838 IGHDP01880 384 aa29.23■■■□□ 2.27
TMEM260-202ENST00000538838 NPR1P16066 1061 aa29.23■■■□□ 2.27
TMEM260-202ENST00000538838 TAF7LQ5H9L4 462 aa29.23■■■□□ 2.27
TMEM260-202ENST00000538838 CELF1Q92879 486 aaKnown RBP29.23■■■□□ 2.27
TMEM260-202ENST00000538838 RBM17Q96I25 401 aaKnown RBP29.23■■■□□ 2.27
TMEM260-202ENST00000538838 HOXA10P31260 410 aaPredicted RBP29.22■■■□□ 2.27
TMEM260-202ENST00000538838 MASTLQ96GX5 879 aa29.22■■■□□ 2.27
TMEM260-202ENST00000538838 CDC5LQ99459 802 aaKnown RBP29.22■■■□□ 2.27
TMEM260-202ENST00000538838 CD2APQ9Y5K6 639 aa29.22■■■□□ 2.27
TMEM260-202ENST00000538838 SIL1Q9H173 461 aa29.21■■■□□ 2.27
TMEM260-202ENST00000538838 PDZRN3Q9UPQ7 1066 aa29.21■■■□□ 2.27
TMEM260-202ENST00000538838 GRAPQ13588 217 aa29.2■■■□□ 2.27
TMEM260-202ENST00000538838 GRAPLQ8TC17 118 aaPredicted RBP29.2■■■□□ 2.27
TMEM260-202ENST00000538838 ZNF622Q969S3 477 aaKnown RBP eCLIP29.2■■■□□ 2.27
TMEM260-202ENST00000538838 CCDC136Q96JN2 1154 aa29.2■■■□□ 2.27
TMEM260-202ENST00000538838 RWDD1Q9H446 243 aaPredicted RBP29.2■■■□□ 2.27
TMEM260-202ENST00000538838 COPRSQ9NQ92 184 aa29.2■■■□□ 2.27
TMEM260-202ENST00000538838 A0A0G2JLW4 131 aa29.2■■■□□ 2.26
TMEM260-202ENST00000538838 DPEP1P16444 411 aa29.2■■■□□ 2.26
TMEM260-202ENST00000538838 B4GALNT3Q6L9W6 998 aa29.2■■■□□ 2.26
TMEM260-202ENST00000538838 ANKRD18AQ8IVF6 992 aa29.2■■■□□ 2.26
TMEM260-202ENST00000538838 CRAMP1Q96RY5 1269 aa29.2■■■□□ 2.26
TMEM260-202ENST00000538838 EXOC6BQ9Y2D4 811 aa29.2■■■□□ 2.26
TMEM260-202ENST00000538838 SLX4Q8IY92 1834 aa29.19■■■□□ 2.26
TMEM260-202ENST00000538838 LRRC37AA6NMS7 1700 aa29.19■■■□□ 2.26
TMEM260-202ENST00000538838 TGFB2P61812 414 aa29.19■■■□□ 2.26
TMEM260-202ENST00000538838 STYK1Q6J9G0 422 aa29.19■■■□□ 2.26
TMEM260-202ENST00000538838 SURF6O75683 361 aaKnown RBP29.18■■■□□ 2.26
TMEM260-202ENST00000538838 IGHMBP2P38935 993 aaKnown RBP29.18■■■□□ 2.26
TMEM260-202ENST00000538838 PUS3Q9BZE2 481 aaKnown RBP29.18■■■□□ 2.26
TMEM260-202ENST00000538838 FHDC1Q9C0D6 1143 aaPredicted RBP29.17■■■□□ 2.26
TMEM260-202ENST00000538838 KCNA3P22001 575 aa29.16■■■□□ 2.26
TMEM260-202ENST00000538838 RPS8P62241 208 aaKnown RBP29.16■■■□□ 2.26
TMEM260-202ENST00000538838 LRRC24Q50LG9 513 aa29.16■■■□□ 2.26
TMEM260-202ENST00000538838 LDHAL6AQ6ZMR3 332 aa29.16■■■□□ 2.26
TMEM260-202ENST00000538838 SLC51AQ86UW1 340 aa29.16■■■□□ 2.26
TMEM260-202ENST00000538838 NLGN2Q8NFZ4 835 aa29.16■■■□□ 2.26
TMEM260-202ENST00000538838 MPHOSPH8Q99549 860 aa29.16■■■□□ 2.26
TMEM260-202ENST00000538838 DCTPP1Q9H773 170 aa29.16■■■□□ 2.26
TMEM260-202ENST00000538838 NOP58Q9Y2X3 529 aaKnown RBP29.16■■■□□ 2.26
TMEM260-202ENST00000538838 EYA2O00167 538 aa29.14■■■□□ 2.26
TMEM260-202ENST00000538838 ALDH1B1P30837 517 aa29.14■■■□□ 2.26
TMEM260-202ENST00000538838 CNNM1Q9NRU3 951 aa29.14■■■□□ 2.26
TMEM260-202ENST00000538838 ATG9AQ7Z3C6 839 aa29.13■■■□□ 2.25
TMEM260-202ENST00000538838 KDM2BQ8NHM5 1336 aa29.13■■■□□ 2.25
TMEM260-202ENST00000538838 APBB1O00213 710 aa29.12■■■□□ 2.25
TMEM260-202ENST00000538838 OS9Q13438 667 aaPredicted RBP29.12■■■□□ 2.25
TMEM260-202ENST00000538838 PRPF40BQ6NWY9 871 aaKnown RBP29.12■■■□□ 2.25
TMEM260-202ENST00000538838 CNKSR1Q969H4 720 aa29.12■■■□□ 2.25
TMEM260-202ENST00000538838 BSDC1Q9NW68 430 aaPredicted RBP29.12■■■□□ 2.25
TMEM260-202ENST00000538838 PPEF1O14829 653 aaPredicted RBP29.12■■■□□ 2.25
TMEM260-202ENST00000538838 CIAO1O76071 339 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms