RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-209ENST00000538439 HYPKQ9NX55 129 aa12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 CHPF2Q9P2E5 772 aa12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 PAPPAQ13219 1627 aa12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 ERBB4Q15303 1308 aa12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 RREB1Q92766 1687 aa12.79□□□□□ -0.36
NPIPB3-209ENST00000538439 KCPQ6ZWJ8 1503 aa12.78□□□□□ -0.36
NPIPB3-209ENST00000538439 RCCD1A6NED2 376 aa12.78□□□□□ -0.36
NPIPB3-209ENST00000538439 SNPHO15079 494 aa12.78□□□□□ -0.36
NPIPB3-209ENST00000538439 STARD3NLO95772 234 aa12.78□□□□□ -0.36
NPIPB3-209ENST00000538439 COL9A1P20849 921 aa12.78□□□□□ -0.36
NPIPB3-209ENST00000538439 MCM6Q14566 821 aa12.78□□□□□ -0.36
NPIPB3-209ENST00000538439 PALLDQ8WX93 1383 aa12.78□□□□□ -0.36
NPIPB3-209ENST00000538439 LOC102724428A0A0B4J2F2 783 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 A6NJR5 290 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 NBPF26B4DH59 902 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 TRIM27P14373 513 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 SIK1P57059 783 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 SULF1Q8IWU6 871 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 PROCA1Q8NCQ7 364 aaPredicted RBP12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 CLUAP1Q96AJ1 413 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 TBC1D2Q9BYX2 928 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 FAM198AQ9UFP1 575 aa12.77□□□□□ -0.37
NPIPB3-209ENST00000538439 UBR2Q8IWV8 1755 aa12.76□□□□□ -0.37
NPIPB3-209ENST00000538439 ATP6V1AP38606 617 aa12.76□□□□□ -0.37
NPIPB3-209ENST00000538439 FKBP5Q13451 457 aaPredicted RBP12.76□□□□□ -0.37
NPIPB3-209ENST00000538439 C20orf194Q5TEA3 1177 aa12.76□□□□□ -0.37
NPIPB3-209ENST00000538439 DNAJC10Q8IXB1 793 aa12.76□□□□□ -0.37
NPIPB3-209ENST00000538439 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.76□□□□□ -0.37
NPIPB3-209ENST00000538439 NUP188Q5SRE5 1749 aa12.76□□□□□ -0.37
NPIPB3-209ENST00000538439 DDX58O95786 925 aaKnown RBP12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 MYL6BP14649 208 aa12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 NHSQ6T4R5 1651 aa12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 G2E3Q7L622 706 aa12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 PANK1Q8TE04 598 aa12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 CRBNQ96SW2 442 aa12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 PHAXQ9H814 394 aaKnown RBP12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 TSKSQ9UJT2 592 aa12.75□□□□□ -0.37
NPIPB3-209ENST00000538439 TRIM37O94972 964 aa12.74□□□□□ -0.37
NPIPB3-209ENST00000538439 ANXA1P04083 346 aa12.74□□□□□ -0.37
NPIPB3-209ENST00000538439 A1BGP04217 495 aa12.74□□□□□ -0.37
NPIPB3-209ENST00000538439 DNAJB2P25686 324 aa12.74□□□□□ -0.37
NPIPB3-209ENST00000538439 CHMP4BQ9H444 224 aaKnown RBP12.74□□□□□ -0.37
NPIPB3-209ENST00000538439 COG6Q9Y2V7 657 aa12.74□□□□□ -0.37
NPIPB3-209ENST00000538439 CACNA1FO60840 1977 aa12.74□□□□□ -0.37
NPIPB3-209ENST00000538439 C5P01031 1676 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 TRIM6-TRIM34B2RNG4 842 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 CYP19A1P11511 503 aaPredicted RBP12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 HMGB2P26583 209 aaKnown RBP12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 MVPQ14764 893 aaKnown RBP12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 PROSER3Q2NL68 480 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 NUDT18Q6ZVK8 323 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 PTF1AQ7RTS3 328 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 NPM2Q86SE8 214 aaKnown RBP12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 PACS2Q86VP3 889 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 EXOC6Q8TAG9 804 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 SLC4A9Q96Q91 983 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 TNNQ9UQP3 1299 aa12.73□□□□□ -0.37
NPIPB3-209ENST00000538439 LAMB4A4D0S4 1761 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 ABCC4O15439 1325 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 RLBP1P12271 317 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 HOXB1P14653 301 aaPredicted RBP12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 AIMP1Q12904 312 aaKnown RBP12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 SLC4A10Q6U841 1118 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 ITPRIPQ8IWB1 547 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 TMEM57Q8N5G2 664 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 XAGE3Q8WTP9 111 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 DDX19BQ9UMR2 479 aa12.72□□□□□ -0.37
NPIPB3-209ENST00000538439 CD46P15529 392 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 PIP4K2AP48426 406 aaPredicted RBP12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 CCT4P50991 539 aaKnown RBP12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 AAMPQ13685 434 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 IFFO2Q5TF58 517 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 NBPF14Q5TI25 921 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 INTS3Q68E01 1043 aaKnown RBP12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 NBPF10Q6P3W6 841 aaKnown RBP12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 KSR2Q6VAB6 950 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 COPS6Q7L5N1 327 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 RIC3Q7Z5B4 369 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 NBPF15Q8N660 670 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 TATDN2Q93075 761 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 PPP4R2Q9NY27 417 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 CCNL1Q9UK58 526 aaPredicted RBP12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 PNMA3Q9UL41 463 aa12.71□□□□□ -0.37
NPIPB3-209ENST00000538439 BTAF1O14981 1849 aa12.71□□□□□ -0.38
NPIPB3-209ENST00000538439 SBF2Q86WG5 1849 aa12.71□□□□□ -0.38
NPIPB3-209ENST00000538439 PI4KAP2A4QPH2 592 aa12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 F6X3S4 739 aa12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 CRKLP46109 303 aaKnown RBP12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 ITPK1Q13572 414 aa12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 PI4KAP1Q8N8J0 262 aa12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 ZNF784Q8NCA9 323 aaPredicted RBP12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 DNAAF4Q8WXU2 420 aa12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 CCDC87Q9NVE4 849 aa12.7□□□□□ -0.38
NPIPB3-209ENST00000538439 APBB1O00213 710 aa12.69□□□□□ -0.38
NPIPB3-209ENST00000538439 APBA3O96018 575 aa12.69□□□□□ -0.38
NPIPB3-209ENST00000538439 IL6STP40189 918 aaPredicted RBP12.69□□□□□ -0.38
NPIPB3-209ENST00000538439 SLC27A3Q5K4L6 730 aa12.69□□□□□ -0.38
NPIPB3-209ENST00000538439 ANKRD13DQ6ZTN6 518 aa12.69□□□□□ -0.38
NPIPB3-209ENST00000538439 LRP10Q7Z4F1 713 aa12.69□□□□□ -0.38
NPIPB3-209ENST00000538439 PLBD2Q8NHP8 589 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms