RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 HAUS7Q99871 368 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 PLA2G12BQ9BX93 195 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 UPF3BQ9BZI7 483 aaKnown RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 IL25Q9H293 177 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 ALDH8A1Q9H2A2 487 aaPredicted RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 ZSWIM6Q9HCJ5 1215 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 BTG4Q9NY30 223 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 DBNLQ9UJU6 430 aaKnown RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 AKAP2Q9Y2D5 859 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 THRAP3Q9Y2W1 955 aaKnown RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 CHMP3Q9Y3E7 222 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 RBM8AQ9Y5S9 174 aaKnown RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 U3KPZ7 1027 aaPredicted RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 SH3TC1Q8TE82 1336 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 CDHR2Q9BYE9 1310 aa7.95□□□□□ -1.14
USP28-206ENST00000538224 COL5A3P25940 1745 aaPredicted RBP7.95□□□□□ -1.14
USP28-206ENST00000538224 MYH15Q9Y2K3 1946 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 LTBP4Q8N2S1 1624 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 EYA2O00167 538 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 A1BGP04217 495 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 NCLP19338 710 aaKnown RBP7.94□□□□□ -1.14
USP28-206ENST00000538224 PIP4K2AP48426 406 aaPredicted RBP7.94□□□□□ -1.14
USP28-206ENST00000538224 AK2P54819 239 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 TCIRG1Q13488 830 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 TSGA10IPQ3SY00 556 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 PRPF40BQ6NWY9 871 aaKnown RBP7.94□□□□□ -1.14
USP28-206ENST00000538224 BLOC1S2Q6QNY1 142 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 TTLL7Q6ZT98 887 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 RUFY3Q7L099 469 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 ANP32BQ92688 251 aaKnown RBP7.94□□□□□ -1.14
USP28-206ENST00000538224 CHMP4CQ96CF2 233 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 JAKMIP1Q96N16 626 aaKnown RBP7.94□□□□□ -1.14
USP28-206ENST00000538224 GZF1Q9H116 711 aaPredicted RBP7.94□□□□□ -1.14
USP28-206ENST00000538224 BOLA2Q9H3K6 86 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 GRPEL1Q9HAV7 217 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 PDRG1Q9NUG6 133 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 TLR7Q9NYK1 1049 aaKnown RBP7.94□□□□□ -1.14
USP28-206ENST00000538224 SMC3Q9UQE7 1217 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 MAP3K15Q6ZN16 1313 aa7.94□□□□□ -1.14
USP28-206ENST00000538224 DDX60Q8IY21 1712 aaKnown RBP7.93□□□□□ -1.14
USP28-206ENST00000538224 EXOC5O00471 708 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 SLC27A2O14975 620 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 PHF14O94880 888 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 HSP90B1P14625 803 aaKnown RBP7.93□□□□□ -1.14
USP28-206ENST00000538224 PDCP20941 246 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 ZNF445P59923 1031 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 CCDC57Q2TAC2 916 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 CREB3L3Q68CJ9 461 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 KBTBD3Q8NAB2 608 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 ZBTB38Q8NAP3 1195 aaPredicted RBP7.93□□□□□ -1.14
USP28-206ENST00000538224 ZBTB3Q9H5J0 574 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 HELLSQ9NRZ9 838 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 LMBRD1Q9NUN5 540 aa7.93□□□□□ -1.14
USP28-206ENST00000538224 TCHHQ07283 1943 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 A0A0D9SFI3 127 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 ERVV-1B6SEH8 477 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 ZFYP08048 801 aaPredicted RBP7.92□□□□□ -1.14
USP28-206ENST00000538224 HMGB1P09429 215 aaKnown RBP7.92□□□□□ -1.14
USP28-206ENST00000538224 PTH1RQ03431 593 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 MCMDC2Q4G0Z9 681 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 TAF7LQ5H9L4 462 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 USPL1Q5W0Q7 1092 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 GIGYF2Q6Y7W6 1299 aaKnown RBP7.92□□□□□ -1.14
USP28-206ENST00000538224 NOL8Q76FK4 1167 aaKnown RBP7.92□□□□□ -1.14
USP28-206ENST00000538224 RASEFQ8IZ41 740 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 TMEM87AQ8NBN3 555 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 KLHDC4Q8TBB5 520 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 PIGBQ92521 554 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 AK7Q96M32 723 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 FAM227BQ96M60 508 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 DBNDD2Q9BQY9 259 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 PAG1Q9NWQ8 432 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 CEP126Q9P2H0 1117 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 DOCK2Q92608 1830 aa7.92□□□□□ -1.14
USP28-206ENST00000538224 STX6O43752 255 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 TAF5LO75529 589 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 IFIT1P09914 478 aaKnown RBP7.91□□□□□ -1.14
USP28-206ENST00000538224 ZSCAN22P10073 491 aaPredicted RBP7.91□□□□□ -1.14
USP28-206ENST00000538224 RPS6KB1P23443 525 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 IL6STP40189 918 aaPredicted RBP7.91□□□□□ -1.14
USP28-206ENST00000538224 IFIT5Q13325 482 aaKnown RBP7.91□□□□□ -1.14
USP28-206ENST00000538224 PKP1Q13835 747 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 CCDC158Q5M9N0 1113 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 ATG9AQ7Z3C6 839 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 DNAJC10Q8IXB1 793 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 FAM43AQ8N2R8 423 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 DNAJC2Q99543 621 aaKnown RBP7.91□□□□□ -1.14
USP28-206ENST00000538224 DSCC1Q9BVC3 393 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 BRPF3Q9ULD4 1205 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 ZDHHC9Q9Y397 364 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 SCN7AQ01118 1682 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 CASZ1Q86V15 1759 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 CHD4Q14839 1912 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 KAT6BQ8WYB5 2073 aa7.91□□□□□ -1.14
USP28-206ENST00000538224 AKAP11Q9UKA4 1901 aa7.9□□□□□ -1.14
USP28-206ENST00000538224 A0A1B0GUL6 1792 aa7.9□□□□□ -1.14
USP28-206ENST00000538224 RIC1Q4ADV7 1423 aa7.9□□□□□ -1.14
USP28-206ENST00000538224 A0A1B0GUL7 405 aa7.9□□□□□ -1.14
USP28-206ENST00000538224 PRPF40AO75400 957 aaKnown RBP7.9□□□□□ -1.14
USP28-206ENST00000538224 CSF1RP07333 972 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms