RNA–Protein interactions for RNA: ENST00000537162.5

CPSF7-217, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 3

Gene CPSF7, Length 801 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-217ENST00000537162 HEG1Q9ULI3 1381 aa13.17□□□□□ -0.3
CPSF7-217ENST00000537162 PRAMEF22A3QJZ6 481 aa13.16□□□□□ -0.3
CPSF7-217ENST00000537162 PPEF1O14829 653 aaPredicted RBP13.16□□□□□ -0.3
CPSF7-217ENST00000537162 NEUROD1Q13562 356 aa13.16□□□□□ -0.3
CPSF7-217ENST00000537162 Q7L0L9 218 aa13.16□□□□□ -0.3
CPSF7-217ENST00000537162 NUTM1Q86Y26 1132 aa13.16□□□□□ -0.3
CPSF7-217ENST00000537162 CFHR5Q9BXR6 569 aa13.16□□□□□ -0.3
CPSF7-217ENST00000537162 WTIPA6NIX2 430 aaPredicted RBP13.15□□□□□ -0.3
CPSF7-217ENST00000537162 UBE2Q2LH0YL09 131 aa13.15□□□□□ -0.3
CPSF7-217ENST00000537162 COL9A1P20849 921 aa13.15□□□□□ -0.3
CPSF7-217ENST00000537162 HOXA10P31260 410 aaPredicted RBP13.15□□□□□ -0.3
CPSF7-217ENST00000537162 TNIP1Q15025 636 aa13.15□□□□□ -0.3
CPSF7-217ENST00000537162 SULT6B1Q6IMI4 303 aa13.15□□□□□ -0.3
CPSF7-217ENST00000537162 CLEC4GQ6UXB4 293 aa13.15□□□□□ -0.3
CPSF7-217ENST00000537162 KDM3BQ7LBC6 1761 aa13.15□□□□□ -0.31
CPSF7-217ENST00000537162 RIC1Q4ADV7 1423 aa13.14□□□□□ -0.31
CPSF7-217ENST00000537162 GRIPAP1Q4V328 841 aa13.14□□□□□ -0.31
CPSF7-217ENST00000537162 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.14□□□□□ -0.31
CPSF7-217ENST00000537162 ZNF333Q96JL9 665 aa13.14□□□□□ -0.31
CPSF7-217ENST00000537162 TMEM106CQ9BVX2 250 aa13.14□□□□□ -0.31
CPSF7-217ENST00000537162 GGA3Q9NZ52 723 aa13.14□□□□□ -0.31
CPSF7-217ENST00000537162 ERBB4Q15303 1308 aa13.13□□□□□ -0.31
CPSF7-217ENST00000537162 ZNF609O15014 1411 aa13.13□□□□□ -0.31
CPSF7-217ENST00000537162 MYCP01106 439 aaPredicted RBP13.13□□□□□ -0.31
CPSF7-217ENST00000537162 C3orf67Q6ZVT6 689 aa13.13□□□□□ -0.31
CPSF7-217ENST00000537162 CD99L2Q8TCZ2 262 aa13.13□□□□□ -0.31
CPSF7-217ENST00000537162 DPF3Q92784 378 aa13.13□□□□□ -0.31
CPSF7-217ENST00000537162 RPGRQ92834 1020 aaKnown RBP13.13□□□□□ -0.31
CPSF7-217ENST00000537162 RTFDC1Q9BY42 306 aaPredicted RBP13.13□□□□□ -0.31
CPSF7-217ENST00000537162 SCAF8Q9UPN6 1271 aaKnown RBP13.13□□□□□ -0.31
CPSF7-217ENST00000537162 STXBP5LQ9Y2K9 1186 aa13.13□□□□□ -0.31
CPSF7-217ENST00000537162 HLFQ16534 295 aa13.12□□□□□ -0.31
CPSF7-217ENST00000537162 SULF1Q8IWU6 871 aa13.12□□□□□ -0.31
CPSF7-217ENST00000537162 TTC5Q8N0Z6 440 aa13.12□□□□□ -0.31
CPSF7-217ENST00000537162 DEFB123Q8N688 67 aa13.12□□□□□ -0.31
CPSF7-217ENST00000537162 VPS33BQ9H267 617 aa13.12□□□□□ -0.31
CPSF7-217ENST00000537162 SIPA1L3O60292 1781 aaPredicted RBP13.12□□□□□ -0.31
CPSF7-217ENST00000537162 KIF7Q2M1P5 1343 aa13.12□□□□□ -0.31
CPSF7-217ENST00000537162 PSMD14O00487 310 aa13.11□□□□□ -0.31
CPSF7-217ENST00000537162 GTF2E1P29083 439 aaPredicted RBP13.11□□□□□ -0.31
CPSF7-217ENST00000537162 KIAA2012Q0VF49 1180 aa13.11□□□□□ -0.31
CPSF7-217ENST00000537162 NPM2Q86SE8 214 aaKnown RBP13.11□□□□□ -0.31
CPSF7-217ENST00000537162 CRAMP1Q96RY5 1269 aa13.11□□□□□ -0.31
CPSF7-217ENST00000537162 SLC4A8Q2Y0W8 1093 aa13.1□□□□□ -0.31
CPSF7-217ENST00000537162 DPF2Q92785 391 aa13.1□□□□□ -0.31
CPSF7-217ENST00000537162 TEX13AQ9BXU3 409 aaPredicted RBP13.1□□□□□ -0.31
CPSF7-217ENST00000537162 KCNQ5Q9NR82 932 aa13.1□□□□□ -0.31
CPSF7-217ENST00000537162 ZNF652Q9Y2D9 606 aa13.1□□□□□ -0.31
CPSF7-217ENST00000537162 ATP6V0A2Q9Y487 856 aa13.1□□□□□ -0.31
CPSF7-217ENST00000537162 USP16Q9Y5T5 823 aa13.1□□□□□ -0.31
CPSF7-217ENST00000537162 DUOX1Q9NRD9 1551 aa13.1□□□□□ -0.31
CPSF7-217ENST00000537162 KCNQ3O43525 872 aa13.09□□□□□ -0.31
CPSF7-217ENST00000537162 KIF4BQ2VIQ3 1234 aa13.09□□□□□ -0.31
CPSF7-217ENST00000537162 PRAMEF18Q5VWM3 479 aa13.09□□□□□ -0.31
CPSF7-217ENST00000537162 ZNF790Q6PG37 636 aa13.09□□□□□ -0.31
CPSF7-217ENST00000537162 RBM17Q96I25 401 aaKnown RBP13.09□□□□□ -0.31
CPSF7-217ENST00000537162 FKBP1BP68106 108 aa13.08□□□□□ -0.32
CPSF7-217ENST00000537162 SREBF2Q12772 1141 aa13.08□□□□□ -0.32
CPSF7-217ENST00000537162 SUPT20HQ8NEM7 779 aa13.08□□□□□ -0.32
CPSF7-217ENST00000537162 SHISA4Q96DD7 197 aa13.08□□□□□ -0.32
CPSF7-217ENST00000537162 MTMR10Q9NXD2 777 aa13.08□□□□□ -0.32
CPSF7-217ENST00000537162 EYSQ5T1H1 3165 aa13.08□□□□□ -0.32
CPSF7-217ENST00000537162 MTHFSDQ2M296 383 aaKnown RBP13.07□□□□□ -0.32
CPSF7-217ENST00000537162 ANGEL2Q5VTE6 544 aaKnown RBP13.07□□□□□ -0.32
CPSF7-217ENST00000537162 DPP8Q6V1X1 898 aaPredicted RBP13.07□□□□□ -0.32
CPSF7-217ENST00000537162 EFCC1Q9HA90 598 aa13.07□□□□□ -0.32
CPSF7-217ENST00000537162 A0A1W2PPC1 479 aa13.06□□□□□ -0.32
CPSF7-217ENST00000537162 NBPF26B4DH59 902 aa13.06□□□□□ -0.32
CPSF7-217ENST00000537162 ZBTB7BO15156 539 aaPredicted RBP13.06□□□□□ -0.32
CPSF7-217ENST00000537162 NBPF10Q6P3W6 841 aaKnown RBP13.06□□□□□ -0.32
CPSF7-217ENST00000537162 ERO1AQ96HE7 468 aa13.06□□□□□ -0.32
CPSF7-217ENST00000537162 PTCH2Q9Y6C5 1203 aa13.06□□□□□ -0.32
CPSF7-217ENST00000537162 NUP98P52948 1817 aa13.06□□□□□ -0.32
CPSF7-217ENST00000537162 TAF1P21675 1872 aa13.06□□□□□ -0.32
CPSF7-217ENST00000537162 RTL9Q8NET4 1388 aa13.06□□□□□ -0.32
CPSF7-217ENST00000537162 ZSWIM8A7E2V4 1837 aa13.05□□□□□ -0.32
CPSF7-217ENST00000537162 IGF2BP3O00425 579 aaKnown RBP eCLIP13.05□□□□□ -0.32
CPSF7-217ENST00000537162 PLA2G5P39877 138 aa13.05□□□□□ -0.32
CPSF7-217ENST00000537162 IFNL1Q8IU54 200 aa13.05□□□□□ -0.32
CPSF7-217ENST00000537162 DBNDD1Q9H9R9 158 aa13.05□□□□□ -0.32
CPSF7-217ENST00000537162 STAP2Q9UGK3 403 aa13.05□□□□□ -0.32
CPSF7-217ENST00000537162 SCN9AQ15858 1988 aa13.04□□□□□ -0.32
CPSF7-217ENST00000537162 IL13P35225 146 aa13.04□□□□□ -0.32
CPSF7-217ENST00000537162 PTPN12Q05209 780 aaKnown RBP13.04□□□□□ -0.32
CPSF7-217ENST00000537162 SCARF1Q14162 830 aa13.04□□□□□ -0.32
CPSF7-217ENST00000537162 SLC9C1Q4G0N8 1177 aa13.04□□□□□ -0.32
CPSF7-217ENST00000537162 FMNL2Q96PY5 1086 aa13.04□□□□□ -0.32
CPSF7-217ENST00000537162 ABCC4O15439 1325 aa13.04□□□□□ -0.32
CPSF7-217ENST00000537162 LAMB2P55268 1798 aa13.04□□□□□ -0.32
CPSF7-217ENST00000537162 LAMB1P07942 1786 aa13.03□□□□□ -0.32
CPSF7-217ENST00000537162 NPM3O75607 178 aaKnown RBP13.03□□□□□ -0.32
CPSF7-217ENST00000537162 SPRYD7Q5W111 196 aa13.03□□□□□ -0.32
CPSF7-217ENST00000537162 ANKRD13DQ6ZTN6 518 aa13.03□□□□□ -0.32
CPSF7-217ENST00000537162 SH3TC2Q8TF17 1288 aa13.03□□□□□ -0.32
CPSF7-217ENST00000537162 CNKSR2Q8WXI2 1034 aa13.03□□□□□ -0.32
CPSF7-217ENST00000537162 UBN2Q6ZU65 1347 aa13.03□□□□□ -0.32
CPSF7-217ENST00000537162 ALDH1A1P00352 501 aa13.02□□□□□ -0.33
CPSF7-217ENST00000537162 CRHR2Q13324 411 aa13.02□□□□□ -0.33
CPSF7-217ENST00000537162 TTLL12Q14166 644 aaPredicted RBP13.02□□□□□ -0.33
CPSF7-217ENST00000537162 SUSD4Q5VX71 490 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms