RNA–Protein interactions for RNA: ENST00000530724.1

TRIM3-210, Transcript of tripartite motif containing 3, human

TSL 2

Gene TRIM3, Length 651 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM3-210	ENST00000530724	RAPGEF3	O95398	923 aa		13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	SKIL	P12757	684 aa		13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	ADD1	P35611	737 aa	Known RBP	13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	TOB2	Q14106	344 aa	Predicted RBP	13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	PRPF40B	Q6NWY9	871 aa	Known RBP	13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	BLOC1S2	Q6QNY1	142 aa		13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	CWC27	Q6UX04	472 aa	Known RBP	13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	DRC7	Q8IY82	874 aa		13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	GTF3C6	Q969F1	213 aa		13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	IL1RAPL2	Q9NP60	686 aa		13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724		V9GYY5	206 aa	Predicted RBP	13.76	□□□□□ -0.21
TRIM3-210	ENST00000530724	ABCC6	O95255	1503 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	COL15A1	P39059	1388 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	ACE	P12821	1306 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724		A0A1W2PQ27	194 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724		A0A1W2PQ64	194 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724		A0A1W2PQD8	194 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	SRGAP3	O43295	1099 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	NR1I2	O75469	434 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	PLCB2	Q00722	1185 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	FILIP1	Q7Z7B0	1213 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	FBXL16	Q8N461	479 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	NAT10	Q9H0A0	1025 aa	Known RBP	13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	ZNF446	Q9NWS9	450 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	SPG7	Q9UQ90	795 aa		13.75	□□□□□ -0.21
TRIM3-210	ENST00000530724	PLEKHG1	Q9ULL1	1385 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	CCDC69	A6NI79	296 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	DHX40	Q8IX18	779 aa	Known RBP	13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	CEP57L1	Q8IYX8	460 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	BBX	Q8WY36	941 aa	Predicted RBP	13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	EYA1	Q99502	592 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	AGXT2	Q9BYV1	514 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	DNAJC25	Q9H1X3	360 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	PSD3	Q9NYI0	1048 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	FHOD1	Q9Y613	1164 aa		13.74	□□□□□ -0.21
TRIM3-210	ENST00000530724	ADAMTS13	Q76LX8	1427 aa		13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	HEG1	Q9ULI3	1381 aa		13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	IRX5	P78411	483 aa	Predicted RBP	13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	FAM160A1	Q05DH4	1040 aa		13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	SNW1	Q13573	536 aa	Known RBP	13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	LARP1	Q6PKG0	1096 aa	Known RBP	13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	CKAP2L	Q8IYA6	745 aa		13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	DNAAF4	Q8WXU2	420 aa		13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	KDM3B	Q7LBC6	1761 aa		13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	ANKAR	Q7Z5J8	1434 aa		13.73	□□□□□ -0.21
TRIM3-210	ENST00000530724	ROBO2	Q9HCK4	1378 aa		13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	NRDC	O43847	1150 aa		13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	HMGB1	P09429	215 aa	Known RBP	13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	TPM4	P67936	248 aa		13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	HDGFL1	Q5TGJ6	251 aa		13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	IQUB	Q8NA54	791 aa		13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	IL17RE	Q8NFR9	667 aa		13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	IPO4	Q8TEX9	1081 aa	Known RBP	13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	NOL10	Q9BSC4	688 aa	Known RBP	13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.72	□□□□□ -0.21
TRIM3-210	ENST00000530724	TMEM94	Q12767	1356 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	IKBKB	O14920	756 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	FOXO3	O43524	673 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	PFKFB2	O60825	505 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	PSME1	Q06323	249 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	ELF2	Q15723	593 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	CAMK4	Q16566	473 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	E4F1	Q66K89	784 aa	Predicted RBP	13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	NBPF11	Q86T75	865 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	TXLNB	Q8N3L3	684 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	NECAB1	Q8N987	351 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	ZNF396	Q96N95	335 aa	Predicted RBP	13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	TMX1	Q9H3N1	280 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	STAG3	Q9UJ98	1225 aa		13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724		U3KPZ7	1027 aa	Predicted RBP	13.71	□□□□□ -0.21
TRIM3-210	ENST00000530724	SALL1	Q9NSC2	1324 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	USP27X	A6NNY8	438 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	PNMA6A	P0CW24	399 aa	Predicted RBP	13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	CPA1	P15085	419 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	EIF4A1	P60842	406 aa	Known RBP	13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	ETF1	P62495	437 aa	Known RBP	13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	TUBB4B	P68371	445 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	CCDC158	Q5M9N0	1113 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	TEX35	Q5T0J7	233 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	BICD2	Q8TD16	824 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	PPP1R13B	Q96KQ4	1090 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	MIS18A	Q9NYP9	233 aa		13.7	□□□□□ -0.22
TRIM3-210	ENST00000530724	NUTM2F	A1L443	756 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	EFCAB8	A8MWE9	144 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	TADA3	O75528	432 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	TAF5L	O75529	589 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	IFIT2	P09913	472 aa	Known RBP	13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	PLA2G4A	P47712	749 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	EVC	P57679	992 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	NMI	Q13287	307 aa	Predicted RBP	13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	NAA30	Q147X3	362 aa	Predicted RBP	13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	NUTM2G	Q5VZR2	741 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	CCDC73	Q6ZRK6	1079 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	TXNDC2	Q86VQ3	553 aa		13.69	□□□□□ -0.22
TRIM3-210	ENST00000530724	ORC3	Q9UBD5	711 aa	Predicted RBP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms