RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 SCN7AQ01118 1682 aa11.51□□□□□ -0.57
SSBP3-212ENST00000528930 FZD9O00144 591 aa11.5□□□□□ -0.57
SSBP3-212ENST00000528930 EIF4A2Q14240 407 aaKnown RBP11.5□□□□□ -0.57
SSBP3-212ENST00000528930 EYA1Q99502 592 aa11.5□□□□□ -0.57
SSBP3-212ENST00000528930 RNF186Q9NXI6 227 aa11.5□□□□□ -0.57
SSBP3-212ENST00000528930 FAM155AB1AL88 458 aaPredicted RBP11.49□□□□□ -0.57
SSBP3-212ENST00000528930 CELF2O95319 508 aaKnown RBP11.49□□□□□ -0.57
SSBP3-212ENST00000528930 USPL1Q5W0Q7 1092 aa11.49□□□□□ -0.57
SSBP3-212ENST00000528930 PLPP6Q8IY26 295 aa11.49□□□□□ -0.57
SSBP3-212ENST00000528930 ZNF622Q969S3 477 aaKnown RBP eCLIP11.49□□□□□ -0.57
SSBP3-212ENST00000528930 COL25A1Q9BXS0 654 aaPredicted RBP11.49□□□□□ -0.57
SSBP3-212ENST00000528930 COL4A5P29400 1685 aa11.49□□□□□ -0.57
SSBP3-212ENST00000528930 TRPA1O75762 1119 aa11.48□□□□□ -0.57
SSBP3-212ENST00000528930 PTCD2Q8WV60 388 aaKnown RBP11.48□□□□□ -0.57
SSBP3-212ENST00000528930 PRPF40BQ6NWY9 871 aaKnown RBP11.47□□□□□ -0.57
SSBP3-212ENST00000528930 FBXO46Q6PJ61 603 aaPredicted RBP11.47□□□□□ -0.57
SSBP3-212ENST00000528930 USP50Q70EL3 339 aaPredicted RBP11.47□□□□□ -0.57
SSBP3-212ENST00000528930 NPC1L1Q9UHC9 1359 aa11.46□□□□□ -0.57
SSBP3-212ENST00000528930 SOS1Q07889 1333 aaPredicted RBP11.46□□□□□ -0.57
SSBP3-212ENST00000528930 ZPR1O75312 459 aa11.46□□□□□ -0.57
SSBP3-212ENST00000528930 SCNN1DP51172 638 aa11.46□□□□□ -0.57
SSBP3-212ENST00000528930 CC2D1BQ5T0F9 858 aaKnown RBP11.46□□□□□ -0.57
SSBP3-212ENST00000528930 BICDL1Q6ZP65 573 aa11.46□□□□□ -0.57
SSBP3-212ENST00000528930 MPNDQ8N594 471 aa11.46□□□□□ -0.57
SSBP3-212ENST00000528930 C7orf43Q8WVR3 580 aa11.46□□□□□ -0.57
SSBP3-212ENST00000528930 BCL2L12Q9HB09 334 aa11.46□□□□□ -0.57
SSBP3-212ENST00000528930 POLR2AP24928 1970 aaKnown RBP11.46□□□□□ -0.58
SSBP3-212ENST00000528930 BRCA2P51587 3418 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 RANBP2P49792 3224 aaKnown RBP11.45□□□□□ -0.58
SSBP3-212ENST00000528930 SNED1Q8TER0 1413 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 HRO43593 1189 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 PHKG2P15735 406 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 PDE6BP35913 854 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 FKBP4Q02790 459 aaKnown RBP eCLIP11.45□□□□□ -0.58
SSBP3-212ENST00000528930 INTS5Q6P9B9 1019 aaKnown RBP11.45□□□□□ -0.58
SSBP3-212ENST00000528930 CNKSR1Q969H4 720 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 KCTD12Q96CX2 325 aaKnown RBP11.45□□□□□ -0.58
SSBP3-212ENST00000528930 BRIP1Q9BX63 1249 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 NARFQ9UHQ1 456 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 SPG7Q9UQ90 795 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 UNC80Q8N2C7 3258 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 HTTP42858 3142 aa11.45□□□□□ -0.58
SSBP3-212ENST00000528930 LMOD1P29536 600 aaPredicted RBP11.44□□□□□ -0.58
SSBP3-212ENST00000528930 IL13P35225 146 aa11.44□□□□□ -0.58
SSBP3-212ENST00000528930 EPS15P42566 896 aa11.44□□□□□ -0.58
SSBP3-212ENST00000528930 MTHFSP49914 203 aa11.44□□□□□ -0.58
SSBP3-212ENST00000528930 FOXK1P85037 733 aa11.44□□□□□ -0.58
SSBP3-212ENST00000528930 KIF23Q02241 960 aaPredicted RBP11.44□□□□□ -0.58
SSBP3-212ENST00000528930 DSG2Q14126 1118 aa11.44□□□□□ -0.58
SSBP3-212ENST00000528930 CCDC93Q567U6 631 aa11.44□□□□□ -0.58
SSBP3-212ENST00000528930 STYK1Q6J9G0 422 aa11.44□□□□□ -0.58
SSBP3-212ENST00000528930 ZNF277Q9NRM2 450 aaPredicted RBP11.44□□□□□ -0.58
SSBP3-212ENST00000528930 COL15A1P39059 1388 aa11.42□□□□□ -0.58
SSBP3-212ENST00000528930 HUNKP57058 714 aa11.42□□□□□ -0.58
SSBP3-212ENST00000528930 IFNL2Q8IZJ0 200 aa11.42□□□□□ -0.58
SSBP3-212ENST00000528930 SYNE4Q8N205 404 aa11.42□□□□□ -0.58
SSBP3-212ENST00000528930 GLIS2Q9BZE0 524 aaPredicted RBP11.42□□□□□ -0.58
SSBP3-212ENST00000528930 PRDM6Q9NQX0 595 aa11.42□□□□□ -0.58
SSBP3-212ENST00000528930 GPHNQ9NQX3 736 aaPredicted RBP11.42□□□□□ -0.58
SSBP3-212ENST00000528930 ERVV-2B6SEH9 535 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 TK2O00142 265 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 SRGNP10124 158 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 IARSP41252 1262 aaKnown RBP11.41□□□□□ -0.58
SSBP3-212ENST00000528930 PPP4R3BQ5MIZ7 849 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 RGMBQ6NW40 437 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 AEBP1Q8IUX7 1158 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 ZNF296Q8WUU4 475 aaPredicted RBP11.41□□□□□ -0.58
SSBP3-212ENST00000528930 KCNK17Q96T54 332 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 PGAP2Q9UHJ9 254 aa11.41□□□□□ -0.58
SSBP3-212ENST00000528930 H0YGN5 161 aa11.4□□□□□ -0.58
SSBP3-212ENST00000528930 CNGB1Q14028 1251 aaPredicted RBP11.4□□□□□ -0.58
SSBP3-212ENST00000528930 NOM1Q5C9Z4 860 aaKnown RBP11.4□□□□□ -0.58
SSBP3-212ENST00000528930 PRR5LQ6MZQ0 368 aa11.4□□□□□ -0.58
SSBP3-212ENST00000528930 CSRNP1Q96S65 589 aa11.4□□□□□ -0.58
SSBP3-212ENST00000528930 RBM27Q9P2N5 1060 aaKnown RBP11.4□□□□□ -0.58
SSBP3-212ENST00000528930 HDAC9Q9UKV0 1011 aa11.4□□□□□ -0.58
SSBP3-212ENST00000528930 CENPFP49454 3210 aa11.39□□□□□ -0.59
SSBP3-212ENST00000528930 INTS3Q68E01 1043 aaKnown RBP11.39□□□□□ -0.59
SSBP3-212ENST00000528930 SULT6B1Q6IMI4 303 aa11.39□□□□□ -0.59
SSBP3-212ENST00000528930 CCDC102AQ96A19 550 aa11.39□□□□□ -0.59
SSBP3-212ENST00000528930 COL3A1P02461 1466 aaPredicted RBP11.38□□□□□ -0.59
SSBP3-212ENST00000528930 SLC10A3P09131 477 aa11.38□□□□□ -0.59
SSBP3-212ENST00000528930 MASTLQ96GX5 879 aa11.38□□□□□ -0.59
SSBP3-212ENST00000528930 PRO3102Q9H379 93 aa11.38□□□□□ -0.59
SSBP3-212ENST00000528930 ZNF408Q9H9D4 720 aa11.38□□□□□ -0.59
SSBP3-212ENST00000528930 DIAPH1O60610 1272 aaKnown RBP11.37□□□□□ -0.59
SSBP3-212ENST00000528930 PTCD1O75127 700 aaKnown RBP11.37□□□□□ -0.59
SSBP3-212ENST00000528930 EIF6P56537 245 aaKnown RBP11.37□□□□□ -0.59
SSBP3-212ENST00000528930 PLEKHO1Q53GL0 409 aaPredicted RBP11.37□□□□□ -0.59
SSBP3-212ENST00000528930 ADARB2Q9NS39 739 aaKnown RBP11.37□□□□□ -0.59
SSBP3-212ENST00000528930 GJA3Q9Y6H8 435 aa11.37□□□□□ -0.59
SSBP3-212ENST00000528930 KDM3BQ7LBC6 1761 aa11.36□□□□□ -0.59
SSBP3-212ENST00000528930 UBR2Q8IWV8 1755 aa11.36□□□□□ -0.59
SSBP3-212ENST00000528930 TBC1D12O60347 775 aa11.36□□□□□ -0.59
SSBP3-212ENST00000528930 AMOTQ4VCS5 1084 aa11.36□□□□□ -0.59
SSBP3-212ENST00000528930 RTKN2Q8IZC4 609 aa11.36□□□□□ -0.59
SSBP3-212ENST00000528930 GPRC5DQ9NZD1 345 aa11.36□□□□□ -0.59
SSBP3-212ENST00000528930 LAMA3Q16787 3333 aa11.36□□□□□ -0.59
SSBP3-212ENST00000528930 ERBB4Q15303 1308 aa11.35□□□□□ -0.59
SSBP3-212ENST00000528930 HMOX1P09601 288 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms