RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 BBOX1O75936 387 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 RAD17O75943 681 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 NTSR2O95665 410 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 HIRAP54198 1017 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-203ENST00000527916 KIAA2012Q0VF49 1180 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 DCTN1Q14203 1278 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 RGMBQ6NW40 437 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 TTLL7Q6ZT98 887 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 USP48Q86UV5 1035 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 ZNF34Q8IZ26 560 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 MPNDQ8N594 471 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 C2orf69Q8N8R5 385 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 PNISRQ8TF01 805 aaKnown RBP13.85□□□□□ -0.19
CPSF1-203ENST00000527916 ZIC5Q96T25 663 aa13.85□□□□□ -0.19
CPSF1-203ENST00000527916 LAMB4A4D0S4 1761 aa13.84□□□□□ -0.19
CPSF1-203ENST00000527916 MYL6BP14649 208 aa13.84□□□□□ -0.19
CPSF1-203ENST00000527916 NFE2L2Q16236 605 aa13.84□□□□□ -0.19
CPSF1-203ENST00000527916 SLC51AQ86UW1 340 aa13.84□□□□□ -0.19
CPSF1-203ENST00000527916 SP8Q8IXZ3 490 aa13.84□□□□□ -0.19
CPSF1-203ENST00000527916 TRPM4Q8TD43 1214 aa13.84□□□□□ -0.19
CPSF1-203ENST00000527916 TRPA1O75762 1119 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 ZNF157P51786 506 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-203ENST00000527916 KIF23Q02241 960 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-203ENST00000527916 SLC10A5Q5PT55 438 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 GIGYF2Q6Y7W6 1299 aaKnown RBP13.83□□□□□ -0.2
CPSF1-203ENST00000527916 C3orf67Q6ZVT6 689 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 KRT26Q7Z3Y9 468 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 MICALL2Q8IY33 904 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 UTP14AQ9BVJ6 771 aaKnown RBP13.83□□□□□ -0.2
CPSF1-203ENST00000527916 GBA2Q9HCG7 927 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-203ENST00000527916 MIS18AQ9NYP9 233 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 AKAP11Q9UKA4 1901 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 ABCC4O15439 1325 aa13.83□□□□□ -0.2
CPSF1-203ENST00000527916 FAM155AB1AL88 458 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-203ENST00000527916 CTU1Q7Z7A3 348 aaKnown RBP13.82□□□□□ -0.2
CPSF1-203ENST00000527916 DPF2Q92785 391 aa13.82□□□□□ -0.2
CPSF1-203ENST00000527916 RNF186Q9NXI6 227 aa13.82□□□□□ -0.2
CPSF1-203ENST00000527916 MYBBP1AQ9BQG0 1328 aaKnown RBP13.82□□□□□ -0.2
CPSF1-203ENST00000527916 MAPK8IP3Q9UPT6 1336 aa13.82□□□□□ -0.2
CPSF1-203ENST00000527916 DDX46Q7L014 1031 aaKnown RBP13.81□□□□□ -0.2
CPSF1-203ENST00000527916 REM2Q8IYK8 340 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-203ENST00000527916 DCPSQ96C86 337 aaKnown RBP13.81□□□□□ -0.2
CPSF1-203ENST00000527916 KDM3BQ7LBC6 1761 aa13.81□□□□□ -0.2
CPSF1-203ENST00000527916 TMC4Q7Z404 712 aa13.8□□□□□ -0.2
CPSF1-203ENST00000527916 ERBB4Q15303 1308 aa13.8□□□□□ -0.2
CPSF1-203ENST00000527916 POLR2AP24928 1970 aaKnown RBP13.8□□□□□ -0.2
CPSF1-203ENST00000527916 YDJCA8MPS7 323 aa13.79□□□□□ -0.2
CPSF1-203ENST00000527916 EIF4A1P60842 406 aaKnown RBP13.79□□□□□ -0.2
CPSF1-203ENST00000527916 PKN2Q16513 984 aaKnown RBP13.79□□□□□ -0.2
CPSF1-203ENST00000527916 TBC1D10BQ4KMP7 808 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-203ENST00000527916 SAMD7Q7Z3H4 446 aa13.79□□□□□ -0.2
CPSF1-203ENST00000527916 BABAM1Q9NWV8 329 aa13.79□□□□□ -0.2
CPSF1-203ENST00000527916 SHTN1A0MZ66 631 aa13.78□□□□□ -0.2
CPSF1-203ENST00000527916 RPS12P25398 132 aaKnown RBP13.78□□□□□ -0.2
CPSF1-203ENST00000527916 GRAPQ13588 217 aa13.78□□□□□ -0.2
CPSF1-203ENST00000527916 SULF1Q8IWU6 871 aa13.78□□□□□ -0.2
CPSF1-203ENST00000527916 GRAPLQ8TC17 118 aaPredicted RBP13.78□□□□□ -0.2
CPSF1-203ENST00000527916 GCC1Q96CN9 775 aa13.78□□□□□ -0.2
CPSF1-203ENST00000527916 CSRNP1Q96S65 589 aa13.78□□□□□ -0.2
CPSF1-203ENST00000527916 ZBTB12Q9Y330 459 aaPredicted RBP13.78□□□□□ -0.2
CPSF1-203ENST00000527916 PSMD14O00487 310 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 SLC10A3P09131 477 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 TMPOP42166 694 aaKnown RBP13.77□□□□□ -0.21
CPSF1-203ENST00000527916 RIPK4P57078 832 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 LMOD3Q0VAK6 560 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 WASHC4Q2M389 1173 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 HSP90AB3PQ58FF7 597 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 DLK2Q6UY11 383 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 HPS5Q9UPZ3 1129 aa13.77□□□□□ -0.21
CPSF1-203ENST00000527916 ADM5C9JUS6 153 aa13.76□□□□□ -0.21
CPSF1-203ENST00000527916 HCLS1P14317 486 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-203ENST00000527916 ZEB1P37275 1124 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-203ENST00000527916 RBM26Q5T8P6 1007 aaKnown RBP13.76□□□□□ -0.21
CPSF1-203ENST00000527916 THUMPD2Q9BTF0 503 aaKnown RBP13.76□□□□□ -0.21
CPSF1-203ENST00000527916 PRKRIP1Q9H875 184 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-203ENST00000527916 HDAC9Q9UKV0 1011 aa13.76□□□□□ -0.21
CPSF1-203ENST00000527916 RUNDC1Q96C34 613 aa13.75□□□□□ -0.21
CPSF1-203ENST00000527916 TRMT112Q9UI30 125 aaKnown RBP13.75□□□□□ -0.21
CPSF1-203ENST00000527916 ANKRD36CQ5JPF3 1778 aa13.75□□□□□ -0.21
CPSF1-203ENST00000527916 SH3TC1Q8TE82 1336 aa13.74□□□□□ -0.21
CPSF1-203ENST00000527916 C6orf229H3BNL8 230 aa13.74□□□□□ -0.21
CPSF1-203ENST00000527916 WDR43Q15061 677 aaKnown RBP eCLIP13.74□□□□□ -0.21
CPSF1-203ENST00000527916 KIF4BQ2VIQ3 1234 aa13.74□□□□□ -0.21
CPSF1-203ENST00000527916 EYA3Q99504 573 aa13.74□□□□□ -0.21
CPSF1-203ENST00000527916 DBNDD1Q9H9R9 158 aa13.74□□□□□ -0.21
CPSF1-203ENST00000527916 NSFL1CQ9UNZ2 370 aaKnown RBP13.74□□□□□ -0.21
CPSF1-203ENST00000527916 RIMBP2O15034 1052 aa13.73□□□□□ -0.21
CPSF1-203ENST00000527916 EGFRP00533 1210 aa13.73□□□□□ -0.21
CPSF1-203ENST00000527916 FKBP1BP68106 108 aa13.73□□□□□ -0.21
CPSF1-203ENST00000527916 NLRP10Q86W26 655 aa13.73□□□□□ -0.21
CPSF1-203ENST00000527916 GGA3Q9NZ52 723 aa13.73□□□□□ -0.21
CPSF1-203ENST00000527916 ADAMTS8Q9UP79 889 aa13.73□□□□□ -0.21
CPSF1-203ENST00000527916 MKI67P46013 3256 aaKnown RBP13.72□□□□□ -0.21
CPSF1-203ENST00000527916 ECE2O60344 883 aa13.72□□□□□ -0.21
CPSF1-203ENST00000527916 EIF2S2P20042 333 aaKnown RBP13.72□□□□□ -0.21
CPSF1-203ENST00000527916 RASAL3Q86YV0 1011 aa13.72□□□□□ -0.21
CPSF1-203ENST00000527916 CDCA5Q96FF9 252 aa13.72□□□□□ -0.21
CPSF1-203ENST00000527916 TSPYL4Q9UJ04 414 aa13.72□□□□□ -0.21
CPSF1-203ENST00000527916 LAMB2P55268 1798 aa13.72□□□□□ -0.21
CPSF1-203ENST00000527916 G3V3G9 751 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms