RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 SNED1Q8TER0 1413 aa13.82□□□□□ -0.2
VPS11-202ENST00000526829 FKBP4Q02790 459 aaKnown RBP eCLIP13.82□□□□□ -0.2
VPS11-202ENST00000526829 L3MBTL3Q96JM7 780 aaPredicted RBP13.82□□□□□ -0.2
VPS11-202ENST00000526829 RIC1Q4ADV7 1423 aa13.82□□□□□ -0.2
VPS11-202ENST00000526829 UTP14CQ5TAP6 766 aaKnown RBP13.82□□□□□ -0.2
VPS11-202ENST00000526829 CHADLQ6NUI6 762 aa13.82□□□□□ -0.2
VPS11-202ENST00000526829 IBTKQ9P2D0 1353 aaPredicted RBP13.81□□□□□ -0.2
VPS11-202ENST00000526829 MAP3K15Q6ZN16 1313 aa13.81□□□□□ -0.2
VPS11-202ENST00000526829 CRY2Q49AN0 593 aa13.81□□□□□ -0.2
VPS11-202ENST00000526829 ABCC12Q96J65 1359 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 FAM177BA6PVY3 158 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 ALDH1B1P30837 517 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 ANAPC15P60006 121 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 RTKN2Q8IZC4 609 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 NGEFQ8N5V2 710 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 THUMPD2Q9BTF0 503 aaKnown RBP13.8□□□□□ -0.2
VPS11-202ENST00000526829 NYXQ9GZU5 481 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 IQCA1LA6NCM1 817 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 POTEIP0CG38 1075 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 POTEJP0CG39 1038 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 PSEN1P49768 467 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 OLFM4Q6UX06 510 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 KIF6Q6ZMV9 814 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 TTLL7Q6ZT98 887 aa13.8□□□□□ -0.2
VPS11-202ENST00000526829 ERBB4Q15303 1308 aa13.79□□□□□ -0.2
VPS11-202ENST00000526829 MAFGO15525 162 aa13.79□□□□□ -0.2
VPS11-202ENST00000526829 ZNF277Q9NRM2 450 aaPredicted RBP13.79□□□□□ -0.2
VPS11-202ENST00000526829 RRP7AQ9Y3A4 280 aaKnown RBP13.79□□□□□ -0.2
VPS11-202ENST00000526829 ADAMTSL1Q8N6G6 1762 aa13.79□□□□□ -0.2
VPS11-202ENST00000526829 ZNF541Q9H0D2 1346 aa13.78□□□□□ -0.2
VPS11-202ENST00000526829 COL13A1Q5TAT6 717 aaPredicted RBP13.78□□□□□ -0.2
VPS11-202ENST00000526829 TAF1DQ9H5J8 278 aaPredicted RBP13.78□□□□□ -0.2
VPS11-202ENST00000526829 CREBZFQ9NS37 354 aa13.78□□□□□ -0.2
VPS11-202ENST00000526829 UBN2Q6ZU65 1347 aa13.78□□□□□ -0.2
VPS11-202ENST00000526829 HOXA10P31260 410 aaPredicted RBP13.78□□□□□ -0.2
VPS11-202ENST00000526829 LDHDQ86WU2 507 aa13.78□□□□□ -0.2
VPS11-202ENST00000526829 GPATCH11Q8N954 259 aa13.78□□□□□ -0.2
VPS11-202ENST00000526829 PASKQ96RG2 1323 aa13.77□□□□□ -0.2
VPS11-202ENST00000526829 FZD9O00144 591 aa13.77□□□□□ -0.21
VPS11-202ENST00000526829 IARSP41252 1262 aaKnown RBP13.77□□□□□ -0.21
VPS11-202ENST00000526829 FAM161AQ3B820 660 aa13.77□□□□□ -0.21
VPS11-202ENST00000526829 NUTM1Q86Y26 1132 aa13.77□□□□□ -0.21
VPS11-202ENST00000526829 ZNF34Q8IZ26 560 aa13.77□□□□□ -0.21
VPS11-202ENST00000526829 SYNE4Q8N205 404 aa13.77□□□□□ -0.21
VPS11-202ENST00000526829 CWC22Q9HCG8 908 aaKnown RBP13.77□□□□□ -0.21
VPS11-202ENST00000526829 APPP05067 770 aa13.76□□□□□ -0.21
VPS11-202ENST00000526829 LMOD3Q0VAK6 560 aa13.76□□□□□ -0.21
VPS11-202ENST00000526829 OS9Q13438 667 aaPredicted RBP13.76□□□□□ -0.21
VPS11-202ENST00000526829 LRP10Q7Z4F1 713 aa13.76□□□□□ -0.21
VPS11-202ENST00000526829 FRAT2O75474 233 aaPredicted RBP13.76□□□□□ -0.21
VPS11-202ENST00000526829 HSPA1AP0DMV8 641 aaKnown RBP13.76□□□□□ -0.21
VPS11-202ENST00000526829 HSPA1BP0DMV9 641 aaKnown RBP13.76□□□□□ -0.21
VPS11-202ENST00000526829 MYL6BP14649 208 aa13.76□□□□□ -0.21
VPS11-202ENST00000526829 SUSD4Q5VX71 490 aa13.76□□□□□ -0.21
VPS11-202ENST00000526829 GIGYF2Q6Y7W6 1299 aaKnown RBP13.76□□□□□ -0.21
VPS11-202ENST00000526829 CENPQQ7L2Z9 268 aaPredicted RBP13.76□□□□□ -0.21
VPS11-202ENST00000526829 CRBNQ96SW2 442 aa13.76□□□□□ -0.21
VPS11-202ENST00000526829 ZBTB3Q9H5J0 574 aa13.76□□□□□ -0.21
VPS11-202ENST00000526829 NTSR2O95665 410 aa13.75□□□□□ -0.21
VPS11-202ENST00000526829 GPTP24298 496 aa13.75□□□□□ -0.21
VPS11-202ENST00000526829 SLC4A3P48751 1232 aa13.75□□□□□ -0.21
VPS11-202ENST00000526829 RIPK4P57078 832 aa13.75□□□□□ -0.21
VPS11-202ENST00000526829 BABAM1Q9NWV8 329 aa13.75□□□□□ -0.21
VPS11-202ENST00000526829 TSPYL4Q9UJ04 414 aa13.75□□□□□ -0.21
VPS11-202ENST00000526829 COL4A5P29400 1685 aa13.75□□□□□ -0.21
VPS11-202ENST00000526829 PDIA6Q15084 440 aa13.74□□□□□ -0.21
VPS11-202ENST00000526829 CRAMP1Q96RY5 1269 aa13.74□□□□□ -0.21
VPS11-202ENST00000526829 HACL1Q9UJ83 578 aa13.74□□□□□ -0.21
VPS11-202ENST00000526829 PCNTO95613 3336 aa13.74□□□□□ -0.21
VPS11-202ENST00000526829 ITGBL1O95965 494 aaPredicted RBP13.74□□□□□ -0.21
VPS11-202ENST00000526829 RPGRQ92834 1020 aaKnown RBP13.74□□□□□ -0.21
VPS11-202ENST00000526829 TRIM44Q96DX7 344 aaPredicted RBP13.74□□□□□ -0.21
VPS11-202ENST00000526829 TMX4Q9H1E5 349 aaPredicted RBP13.74□□□□□ -0.21
VPS11-202ENST00000526829 EPHX2P34913 555 aa13.73□□□□□ -0.21
VPS11-202ENST00000526829 PARP10Q53GL7 1025 aa13.73□□□□□ -0.21
VPS11-202ENST00000526829 L1TD1Q5T7N2 865 aaKnown RBP13.73□□□□□ -0.21
VPS11-202ENST00000526829 GPC2Q8N158 579 aa13.73□□□□□ -0.21
VPS11-202ENST00000526829 CEP120Q8N960 986 aa13.73□□□□□ -0.21
VPS11-202ENST00000526829 ANKRD36CQ5JPF3 1778 aa13.73□□□□□ -0.21
VPS11-202ENST00000526829 CNTNAP1P78357 1384 aa13.73□□□□□ -0.21
VPS11-202ENST00000526829 NPM3O75607 178 aaKnown RBP13.72□□□□□ -0.21
VPS11-202ENST00000526829 C8orf34Q49A92 452 aa13.72□□□□□ -0.21
VPS11-202ENST00000526829 C3orf67Q6ZVT6 689 aa13.72□□□□□ -0.21
VPS11-202ENST00000526829 PPP1R42Q7Z4L9 355 aa13.72□□□□□ -0.21
VPS11-202ENST00000526829 RBM17Q96I25 401 aaKnown RBP13.72□□□□□ -0.21
VPS11-202ENST00000526829 MYCNP04198 464 aaPredicted RBP13.72□□□□□ -0.21
VPS11-202ENST00000526829 EIF2S2P20042 333 aaKnown RBP13.72□□□□□ -0.21
VPS11-202ENST00000526829 TMPOP42166 694 aaKnown RBP13.72□□□□□ -0.21
VPS11-202ENST00000526829 SLC10A5Q5PT55 438 aa13.72□□□□□ -0.21
VPS11-202ENST00000526829 PNMA8AQ86V59 439 aaPredicted RBP13.72□□□□□ -0.21
VPS11-202ENST00000526829 JDP2Q8WYK2 163 aa13.72□□□□□ -0.21
VPS11-202ENST00000526829 MKRN1Q9UHC7 482 aaKnown RBP13.72□□□□□ -0.21
VPS11-202ENST00000526829 LTBP1Q14766 1721 aa13.71□□□□□ -0.21
VPS11-202ENST00000526829 VGLL3A8MV65 326 aa13.71□□□□□ -0.21
VPS11-202ENST00000526829 WDR43Q15061 677 aaKnown RBP eCLIP13.71□□□□□ -0.21
VPS11-202ENST00000526829 PROSER3Q2NL68 480 aa13.71□□□□□ -0.21
VPS11-202ENST00000526829 EAPPQ56P03 285 aaPredicted RBP13.71□□□□□ -0.21
VPS11-202ENST00000526829 LAMB2P55268 1798 aa13.71□□□□□ -0.22
VPS11-202ENST00000526829 PPEF1O14829 653 aaPredicted RBP13.71□□□□□ -0.22
VPS11-202ENST00000526829 TNS4Q8IZW8 715 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms