RNA–Protein interactions for RNA: ENST00000524094.1

LINC01339-204, Transcript of long intergenic non-protein coding RNA 1339, human

TSL 3

Gene LINC01339, Length 269 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC01339-204	ENST00000524094	RBM19	Q9Y4C8	960 aa	Known RBP	4.58	□□□□□ -1.68
LINC01339-204	ENST00000524094	OPLAH	O14841	1288 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	TREH	O43280	583 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	IGSF3	O75054	1194 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	FAM13A	O94988	1023 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	RHOQ	P17081	205 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	RNF144A	P50876	292 aa	Predicted RBP	4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	COL19A1	Q14993	1142 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	ESCO1	Q5FWF5	840 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	OGFOD2	Q6N063	350 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	SLCO4C1	Q6ZQN7	724 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	ALDH16A1	Q8IZ83	802 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	MRRF	Q96E11	262 aa	Known RBP	4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	SETDB2	Q96T68	719 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	CFHR5	Q9BXR6	569 aa		4.57	□□□□□ -1.68
LINC01339-204	ENST00000524094	LOC105371045	A0A1W2PR82	267 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	GPR182	O15218	404 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	P4HB	P07237	508 aa	Known RBP	4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	VAMP1	P23763	118 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	RANGAP1	P46060	587 aa	Predicted RBP	4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	FMR1	Q06787	632 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	TLR1	Q15399	786 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	SPOCD1	Q6ZMY3	1216 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	GIPC2	Q8TF65	315 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	BCL2L13	Q9BXK5	485 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	GGNBP2	Q9H3C7	697 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	KLK14	Q9P0G3	267 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	WWC3	Q9ULE0	1092 aa		4.56	□□□□□ -1.68
LINC01339-204	ENST00000524094	SERTM1	A2A2V5	107 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	SPATA31C2	B4DYI2	1134 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	EPX	P11678	715 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	MAPK1	P28482	360 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	MRPL58	Q14197	206 aa	Known RBP	4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	C11orf91	Q3C1V1	193 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	C4orf17	Q53FE4	359 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	GJD3	Q8N144	294 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	PHACTR1	Q9C0D0	580 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	GGA1	Q9UJY5	639 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	HCN2	Q9UL51	889 aa		4.55	□□□□□ -1.68
LINC01339-204	ENST00000524094	GPC1	P35052	558 aa		4.54	□□□□□ -1.68
LINC01339-204	ENST00000524094	RTN1	Q16799	776 aa		4.54	□□□□□ -1.68
LINC01339-204	ENST00000524094	C1orf53	Q5VUE5	145 aa		4.54	□□□□□ -1.68
LINC01339-204	ENST00000524094	PRICKLE2	Q7Z3G6	844 aa		4.54	□□□□□ -1.68
LINC01339-204	ENST00000524094	ZNF280C	Q8ND82	737 aa		4.54	□□□□□ -1.68
LINC01339-204	ENST00000524094	CITED4	Q96RK1	184 aa		4.54	□□□□□ -1.68
LINC01339-204	ENST00000524094	NCAN	O14594	1321 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	MEN1	O00255	615 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	RECK	O95980	971 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	GP2	P55259	537 aa	Known RBP	4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	DGKZ	Q13574	1117 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	PRRT3	Q5FWE3	981 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	RHBDD1	Q8TEB9	315 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	ALKBH8	Q96BT7	664 aa	Known RBP	4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	IFT43	Q96FT9	208 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	GAS2L1	Q99501	681 aa	Predicted RBP	4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	ESF1	Q9H501	851 aa	Known RBP	4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	CABP1	Q9NZU7	370 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	POLI	Q9UNA4	740 aa		4.53	□□□□□ -1.68
LINC01339-204	ENST00000524094	PRRG2	O14669	202 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	PDGFA	P04085	211 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	THBS1	P07996	1170 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	ATP4A	P20648	1035 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	BRD2	P25440	801 aa	Known RBP	4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	SSTR4	P31391	388 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	EHHADH	Q08426	723 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	POU4F2	Q12837	409 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	CHSY3	Q70JA7	882 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	NGLY1	Q96IV0	654 aa		4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094	NIFK	Q9BYG3	293 aa	Known RBP	4.52	□□□□□ -1.69
LINC01339-204	ENST00000524094		A6NHS1	94 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	MZF1	P28698	734 aa	Predicted RBP	4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	INPP5B	P32019	993 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	ZAP70	P43403	619 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	PLCB3	Q01970	1234 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	NACC1	Q96RE7	527 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	ZIC5	Q96T25	663 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	BACH2	Q9BYV9	841 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	NIF3L1	Q9GZT8	377 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	NUCKS1	Q9H1E3	243 aa	Known RBP	4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	DYRK1B	Q9Y463	629 aa		4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.51	□□□□□ -1.69
LINC01339-204	ENST00000524094	MICAL2	O94851	1124 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	ZNF865	P0CJ78	1059 aa	Predicted RBP	4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	PHKA2	P46019	1235 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	UBAP2L	Q14157	1087 aa	Known RBP	4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	ENOX2	Q16206	610 aa	Known RBP	4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	ALKBH2	Q6NS38	261 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	NBPF10	Q6P3W6	841 aa	Known RBP	4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	TREML1	Q86YW5	311 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	NBPF15	Q8N660	670 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	EDEM1	Q92611	657 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	SUSD3	Q96L08	255 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	FAM161B	Q96MY7	647 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	NLRP3	Q96P20	1036 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	BRPF3	Q9ULD4	1205 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	USP20	Q9Y2K6	914 aa		4.5	□□□□□ -1.69
LINC01339-204	ENST00000524094	KCNMB2	Q9Y691	235 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms