RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 TCEANC2Q96MN5 208 aa13.2□□□□□ -0.3
HDAC9-228ENST00000524023 C19orf44Q9H6X5 657 aa13.2□□□□□ -0.3
HDAC9-228ENST00000524023 ABCC6O95255 1503 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 PRKCSHP14314 528 aaPredicted RBP13.19□□□□□ -0.3
HDAC9-228ENST00000524023 PDCP20941 246 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 RABL6Q3YEC7 729 aaPredicted RBP13.19□□□□□ -0.3
HDAC9-228ENST00000524023 TNNI3KQ59H18 835 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 USPL1Q5W0Q7 1092 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 CDC37L1Q7L3B6 337 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 TTC5Q8N0Z6 440 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 FPGT-TNNI3KV9GXZ4 949 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 ARFGEF2Q9Y6D5 1785 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 COL15A1P39059 1388 aa13.19□□□□□ -0.3
HDAC9-228ENST00000524023 PIP4K2AP48426 406 aaPredicted RBP13.18□□□□□ -0.3
HDAC9-228ENST00000524023 TFCP2Q12800 502 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 UBE2Q2Q8WVN8 375 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 DCAF5Q96JK2 942 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 ADCY5O95622 1261 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 KRT85P78386 507 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 UBE3BQ7Z3V4 1068 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 TTC6Q86TZ1 520 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 FERMT3Q86UX7 667 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
HDAC9-228ENST00000524023 CYP27B1O15528 508 aa13.17□□□□□ -0.3
HDAC9-228ENST00000524023 KDM4AO75164 1064 aa13.17□□□□□ -0.3
HDAC9-228ENST00000524023 KIAA2012Q0VF49 1180 aa13.17□□□□□ -0.3
HDAC9-228ENST00000524023 ELP1O95163 1332 aa13.17□□□□□ -0.3
HDAC9-228ENST00000524023 RFX7Q2KHR2 1363 aa13.17□□□□□ -0.3
HDAC9-228ENST00000524023 KRT32Q14532 448 aa13.17□□□□□ -0.3
HDAC9-228ENST00000524023 PLEKHG2Q9H7P9 1386 aa13.17□□□□□ -0.3
HDAC9-228ENST00000524023 A0A087WZG4 1122 aa13.16□□□□□ -0.3
HDAC9-228ENST00000524023 ATP5J2-PTCD1G3V325 749 aa13.16□□□□□ -0.3
HDAC9-228ENST00000524023 PTCD1O75127 700 aaKnown RBP13.16□□□□□ -0.3
HDAC9-228ENST00000524023 CSB-PGBD3P0DP91 1061 aa13.16□□□□□ -0.3
HDAC9-228ENST00000524023 CASP7P55210 303 aa13.16□□□□□ -0.3
HDAC9-228ENST00000524023 FAM173BQ6P4H8 233 aa13.16□□□□□ -0.3
HDAC9-228ENST00000524023 NDUFB9Q9Y6M9 179 aa13.16□□□□□ -0.3
HDAC9-228ENST00000524023 PKD1L3Q7Z443 1732 aa13.16□□□□□ -0.3
HDAC9-228ENST00000524023 ZNF609O15014 1411 aa13.15□□□□□ -0.3
HDAC9-228ENST00000524023 STK3Q13188 491 aa13.15□□□□□ -0.3
HDAC9-228ENST00000524023 DDX17Q92841 729 aaKnown RBP13.15□□□□□ -0.3
HDAC9-228ENST00000524023 HAUS7Q99871 368 aa13.15□□□□□ -0.3
HDAC9-228ENST00000524023 DBNDD2Q9BQY9 259 aa13.15□□□□□ -0.3
HDAC9-228ENST00000524023 MPNDQ8N594 471 aa13.15□□□□□ -0.3
HDAC9-228ENST00000524023 NEK1Q96PY6 1258 aa13.15□□□□□ -0.3
HDAC9-228ENST00000524023 DNAJC2Q99543 621 aaKnown RBP13.15□□□□□ -0.3
HDAC9-228ENST00000524023 LAMB4A4D0S4 1761 aa13.15□□□□□ -0.3
HDAC9-228ENST00000524023 GLI3P10071 1580 aa13.15□□□□□ -0.31
HDAC9-228ENST00000524023 CHGBP05060 677 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 CCDC192P0DO97 292 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 CCDC129Q6ZRS4 1044 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 PLBD2Q8NHP8 589 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 GTF3C6Q969F1 213 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 ZNF830Q96NB3 372 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-228ENST00000524023 SEC62Q99442 399 aaKnown RBP13.14□□□□□ -0.31
HDAC9-228ENST00000524023 SCAND2PQ9GZW5 306 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-228ENST00000524023 U3KPZ7 1027 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-228ENST00000524023 UQCRHLA0A096LP55 91 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 UQCRHP07919 91 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 LIG1P18858 919 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 CABP4P57796 275 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 CHRNA2Q15822 529 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 MCMDC2Q4G0Z9 681 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
HDAC9-228ENST00000524023 ATF3P18847 181 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 SASS6Q6UVJ0 657 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 LMBR1LQ6UX01 489 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 Q6ZUG5 572 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 PIBF1Q8WXW3 757 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 AP5Z1O43299 807 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 CYP21A2P08686 494 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 MAP3K11Q16584 847 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 DDX46Q7L014 1031 aaKnown RBP13.13□□□□□ -0.31
HDAC9-228ENST00000524023 SPATA32Q96LK8 384 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 NUP62CLQ9H1M0 184 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 TTC12Q9H892 705 aaPredicted RBP13.13□□□□□ -0.31
HDAC9-228ENST00000524023 TFIP11Q9UBB9 837 aaKnown RBP13.13□□□□□ -0.31
HDAC9-228ENST00000524023 CHMP3Q9Y3E7 222 aa13.13□□□□□ -0.31
HDAC9-228ENST00000524023 JAK2O60674 1132 aa13.12□□□□□ -0.31
HDAC9-228ENST00000524023 FOXO4P98177 505 aa13.12□□□□□ -0.31
HDAC9-228ENST00000524023 KBTBD3Q8NAB2 608 aa13.12□□□□□ -0.31
HDAC9-228ENST00000524023 LEO1Q8WVC0 666 aaPredicted RBP13.12□□□□□ -0.31
HDAC9-228ENST00000524023 LAMA4Q16363 1823 aa13.12□□□□□ -0.31
HDAC9-228ENST00000524023 PARP4Q9UKK3 1724 aaKnown RBP13.12□□□□□ -0.31
HDAC9-228ENST00000524023 SH3TC1Q8TE82 1336 aa13.12□□□□□ -0.31
HDAC9-228ENST00000524023 H7C1W4 665 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 PLCB2Q00722 1185 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 PDCL3Q9H2J4 239 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 GOLGA6L4A6NEF3 574 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 NBPF26B4DH59 902 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 NOLC1Q14978 699 aaKnown RBP eCLIP13.11□□□□□ -0.31
HDAC9-228ENST00000524023 CAMK4Q16566 473 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 NBPF14Q5TI25 921 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 NBPF10Q6P3W6 841 aaKnown RBP13.11□□□□□ -0.31
HDAC9-228ENST00000524023 ATG9AQ7Z3C6 839 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 NBPF15Q8N660 670 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 FAM200AQ8TCP9 573 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 DACT1Q9NYF0 836 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 TNS3Q68CZ2 1445 aa13.11□□□□□ -0.31
HDAC9-228ENST00000524023 PALLDQ8WX93 1383 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms