RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 C11orf16Q9NQ32 467 aa11.49□□□□□ -0.57
LSM1-202ENST00000520286 CNTN3Q9P232 1028 aa11.49□□□□□ -0.57
LSM1-202ENST00000520286 FAM8A1Q9UBU6 413 aa11.49□□□□□ -0.57
LSM1-202ENST00000520286 EREGO14944 169 aa11.48□□□□□ -0.57
LSM1-202ENST00000520286 GADD45BO75293 160 aaPredicted RBP11.48□□□□□ -0.57
LSM1-202ENST00000520286 SAMD5Q5TGI4 173 aa11.48□□□□□ -0.57
LSM1-202ENST00000520286 GALNT12Q8IXK2 581 aa11.48□□□□□ -0.57
LSM1-202ENST00000520286 UBXN4Q92575 508 aa11.48□□□□□ -0.57
LSM1-202ENST00000520286 TINF2Q9BSI4 451 aa11.48□□□□□ -0.57
LSM1-202ENST00000520286 ZCCHC2Q9C0B9 1178 aaKnown RBP11.48□□□□□ -0.57
LSM1-202ENST00000520286 ACBD3Q9H3P7 528 aa11.48□□□□□ -0.57
LSM1-202ENST00000520286 CAPN10Q9HC96 672 aa11.48□□□□□ -0.57
LSM1-202ENST00000520286 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.48□□□□□ -0.57
LSM1-202ENST00000520286 USP31Q70CQ4 1352 aa11.47□□□□□ -0.57
LSM1-202ENST00000520286 TTC39BQ5VTQ0 682 aaPredicted RBP11.47□□□□□ -0.57
LSM1-202ENST00000520286 PMEPA1Q969W9 287 aa11.47□□□□□ -0.57
LSM1-202ENST00000520286 ZFP42Q96MM3 310 aa11.47□□□□□ -0.57
LSM1-202ENST00000520286 SRCIN1Q9C0H9 1055 aa11.47□□□□□ -0.57
LSM1-202ENST00000520286 USP17L7P0C7H9 530 aa11.46□□□□□ -0.57
LSM1-202ENST00000520286 EFHC2Q5JST6 749 aa11.46□□□□□ -0.57
LSM1-202ENST00000520286 NXPE4Q6UWF7 544 aa11.46□□□□□ -0.57
LSM1-202ENST00000520286 BCO2Q9BYV7 579 aa11.46□□□□□ -0.57
LSM1-202ENST00000520286 DNMT3LQ9UJW3 386 aa11.46□□□□□ -0.57
LSM1-202ENST00000520286 CES1P23141 567 aa11.45□□□□□ -0.58
LSM1-202ENST00000520286 TAF1CQ15572 869 aaPredicted RBP11.45□□□□□ -0.58
LSM1-202ENST00000520286 CTC1Q2NKJ3 1217 aa11.45□□□□□ -0.58
LSM1-202ENST00000520286 MEI1Q5TIA1 1274 aa11.45□□□□□ -0.58
LSM1-202ENST00000520286 HS2ST1Q7LGA3 356 aa11.45□□□□□ -0.58
LSM1-202ENST00000520286 SLC43A3Q8NBI5 491 aa11.45□□□□□ -0.58
LSM1-202ENST00000520286 DDX41Q9UJV9 622 aaKnown RBP11.45□□□□□ -0.58
LSM1-202ENST00000520286 KCNH4Q9UQ05 1017 aa11.45□□□□□ -0.58
LSM1-202ENST00000520286 PTPN12Q05209 780 aaKnown RBP11.44□□□□□ -0.58
LSM1-202ENST00000520286 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.44□□□□□ -0.58
LSM1-202ENST00000520286 ZNF394Q53GI3 561 aa11.44□□□□□ -0.58
LSM1-202ENST00000520286 SASH3O75995 380 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 TNNI2P48788 182 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 SMCPP49901 116 aaPredicted RBP11.43□□□□□ -0.58
LSM1-202ENST00000520286 KCNQ4P56696 695 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 GNL2Q13823 731 aaKnown RBP11.43□□□□□ -0.58
LSM1-202ENST00000520286 USP48Q86UV5 1035 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 ZNF654Q8IZM8 581 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 TANGO6Q9C0B7 1094 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 SUV39H2Q9H5I1 410 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 GGT7Q9UJ14 662 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 PCDHGB7Q9Y5F8 929 aa11.43□□□□□ -0.58
LSM1-202ENST00000520286 ST13P50502 369 aaKnown RBP11.42□□□□□ -0.58
LSM1-202ENST00000520286 GRM2Q14416 872 aa11.42□□□□□ -0.58
LSM1-202ENST00000520286 LBRQ14739 615 aaKnown RBP11.42□□□□□ -0.58
LSM1-202ENST00000520286 SENP3-EIF4A1A0A087X0R7 540 aa11.41□□□□□ -0.58
LSM1-202ENST00000520286 ATXN7O15265 892 aaPredicted RBP11.41□□□□□ -0.58
LSM1-202ENST00000520286 FAM157BP0CG42 384 aa11.41□□□□□ -0.58
LSM1-202ENST00000520286 VEGFBP49765 207 aa11.41□□□□□ -0.58
LSM1-202ENST00000520286 RACK1P63244 317 aaKnown RBP11.41□□□□□ -0.58
LSM1-202ENST00000520286 SFSWAPQ12872 951 aaKnown RBP11.41□□□□□ -0.58
LSM1-202ENST00000520286 CCINQ13939 588 aa11.41□□□□□ -0.58
LSM1-202ENST00000520286 FIGNL1Q6PIW4 674 aa11.41□□□□□ -0.58
LSM1-202ENST00000520286 KRT25Q7Z3Z0 450 aa11.41□□□□□ -0.58
LSM1-202ENST00000520286 AXIN1O15169 862 aa11.4□□□□□ -0.58
LSM1-202ENST00000520286 MAN1A2O60476 641 aa11.4□□□□□ -0.58
LSM1-202ENST00000520286 CYP2E1P05181 493 aaPredicted RBP11.4□□□□□ -0.58
LSM1-202ENST00000520286 TARSP26639 723 aaKnown RBP11.4□□□□□ -0.58
LSM1-202ENST00000520286 RIPOR1Q6ZS17 1223 aa11.4□□□□□ -0.58
LSM1-202ENST00000520286 SRA1Q9HD15 236 aaKnown RBP11.4□□□□□ -0.58
LSM1-202ENST00000520286 PPP4R2Q9NY27 417 aa11.4□□□□□ -0.58
LSM1-202ENST00000520286 KANSL3Q9P2N6 904 aa11.4□□□□□ -0.58
LSM1-202ENST00000520286 PRKAG2Q9UGJ0 569 aa11.4□□□□□ -0.58
LSM1-202ENST00000520286 INPP5FQ9Y2H2 1132 aa11.4□□□□□ -0.58
LSM1-202ENST00000520286 DGAT1O75907 488 aa11.39□□□□□ -0.59
LSM1-202ENST00000520286 RGS20O76081 388 aa11.39□□□□□ -0.59
LSM1-202ENST00000520286 PKDCCQ504Y2 493 aa11.39□□□□□ -0.59
LSM1-202ENST00000520286 KIAA0319Q5VV43 1072 aa11.39□□□□□ -0.59
LSM1-202ENST00000520286 GSX2Q9BZM3 304 aa11.39□□□□□ -0.59
LSM1-202ENST00000520286 EHD4Q9H223 541 aa11.39□□□□□ -0.59
LSM1-202ENST00000520286 PCDHGC4Q9Y5F7 938 aa11.39□□□□□ -0.59
LSM1-202ENST00000520286 A0A1W2PP55 124 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 DCDC2BA2VCK2 349 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 PHF20L1A8MW92 1017 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 KHNYNO15037 678 aaKnown RBP11.38□□□□□ -0.59
LSM1-202ENST00000520286 EFSO43281 561 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 MMP20O60882 483 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 EDN3P14138 238 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 GSTT1P30711 240 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 OR13H1Q8NG92 308 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 LATS2Q9NRM7 1088 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 TRAK1Q9UPV9 953 aa11.38□□□□□ -0.59
LSM1-202ENST00000520286 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.38□□□□□ -0.59
LSM1-202ENST00000520286 THBS1P07996 1170 aa11.37□□□□□ -0.59
LSM1-202ENST00000520286 RARAP10276 462 aa11.37□□□□□ -0.59
LSM1-202ENST00000520286 PEAR1Q5VY43 1037 aaPredicted RBP11.36□□□□□ -0.59
LSM1-202ENST00000520286 CRIPAKQ8N1N5 446 aa11.36□□□□□ -0.59
LSM1-202ENST00000520286 GLIS3Q8NEA6 775 aa11.36□□□□□ -0.59
LSM1-202ENST00000520286 NUCKS1Q9H1E3 243 aaKnown RBP11.36□□□□□ -0.59
LSM1-202ENST00000520286 POTECB2RU33 542 aa11.35□□□□□ -0.59
LSM1-202ENST00000520286 DNAJA1P31689 397 aaKnown RBP11.35□□□□□ -0.59
LSM1-202ENST00000520286 TNP2Q05952 138 aa11.35□□□□□ -0.59
LSM1-202ENST00000520286 LAMC2Q13753 1193 aa11.35□□□□□ -0.59
LSM1-202ENST00000520286 ERMP1Q7Z2K6 904 aa11.35□□□□□ -0.59
LSM1-202ENST00000520286 PNMA5Q96PV4 448 aa11.35□□□□□ -0.59
LSM1-202ENST00000520286 GMLQ99445 158 aa11.35□□□□□ -0.59
LSM1-202ENST00000520286 ZFATQ9P243 1243 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms