RNA–Protein interactions for RNA: ENST00000520233.1

SDC2-205, Transcript of syndecan 2, humanhuman

TSL 4

Gene SDC2, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-205ENST00000520233 CCDC152Q4G0S7 254 aa22.24■■□□□ 1.15
SDC2-205ENST00000520233 CEP85Q6P2H3 762 aa22.24■■□□□ 1.15
SDC2-205ENST00000520233 PDZRN3Q9UPQ7 1066 aa22.23■■□□□ 1.15
SDC2-205ENST00000520233 PCDHB15Q9Y5E8 787 aa22.23■■□□□ 1.15
SDC2-205ENST00000520233 ANKRD31Q8N7Z5 1873 aa22.22■■□□□ 1.15
SDC2-205ENST00000520233 CHMP3Q9Y3E7 222 aa22.22■■□□□ 1.15
SDC2-205ENST00000520233 RTL9Q8NET4 1388 aa22.22■■□□□ 1.15
SDC2-205ENST00000520233 MYH3P11055 1940 aa22.21■■□□□ 1.15
SDC2-205ENST00000520233 CCDC85AQ96PX6 553 aaPredicted RBP22.21■■□□□ 1.15
SDC2-205ENST00000520233 GREM2Q9H772 168 aa22.21■■□□□ 1.15
SDC2-205ENST00000520233 CD2APQ9Y5K6 639 aa22.21■■□□□ 1.15
SDC2-205ENST00000520233 PNMA6EA0A0J9YXQ4 647 aa22.2■■□□□ 1.14
SDC2-205ENST00000520233 SRGAP3O43295 1099 aa22.2■■□□□ 1.14
SDC2-205ENST00000520233 POLA2Q14181 598 aa22.2■■□□□ 1.14
SDC2-205ENST00000520233 FAM161AQ3B820 660 aa22.2■■□□□ 1.14
SDC2-205ENST00000520233 RPGRQ92834 1020 aaKnown RBP22.2■■□□□ 1.14
SDC2-205ENST00000520233 KIF13BQ9NQT8 1826 aa22.2■■□□□ 1.14
SDC2-205ENST00000520233 SRGNP10124 158 aa22.19■■□□□ 1.14
SDC2-205ENST00000520233 ITGA6P23229 1130 aa22.19■■□□□ 1.14
SDC2-205ENST00000520233 HOXA10P31260 410 aaPredicted RBP22.19■■□□□ 1.14
SDC2-205ENST00000520233 TGFB2P61812 414 aa22.19■■□□□ 1.14
SDC2-205ENST00000520233 IFIT5Q13325 482 aaKnown RBP22.19■■□□□ 1.14
SDC2-205ENST00000520233 CCDC57Q2TAC2 916 aa22.19■■□□□ 1.14
SDC2-205ENST00000520233 C2CD5Q86YS7 1000 aa22.19■■□□□ 1.14
SDC2-205ENST00000520233 SIRT2Q8IXJ6 389 aa22.19■■□□□ 1.14
SDC2-205ENST00000520233 SSH3Q8TE77 659 aa22.19■■□□□ 1.14
SDC2-205ENST00000520233 ANKRD18BA2A2Z9 1011 aa22.18■■□□□ 1.14
SDC2-205ENST00000520233 H0YIN7 160 aa22.18■■□□□ 1.14
SDC2-205ENST00000520233 NPR1P16066 1061 aa22.18■■□□□ 1.14
SDC2-205ENST00000520233 DDX46Q7L014 1031 aaKnown RBP22.18■■□□□ 1.14
SDC2-205ENST00000520233 RBM17Q96I25 401 aaKnown RBP22.18■■□□□ 1.14
SDC2-205ENST00000520233 HMMRO75330 724 aa22.17■■□□□ 1.14
SDC2-205ENST00000520233 RFX5P48382 616 aaPredicted RBP22.17■■□□□ 1.14
SDC2-205ENST00000520233 MASTLQ96GX5 879 aa22.17■■□□□ 1.14
SDC2-205ENST00000520233 SEC31BQ9NQW1 1179 aa22.17■■□□□ 1.14
SDC2-205ENST00000520233 STYK1Q6J9G0 422 aa22.16■■□□□ 1.14
SDC2-205ENST00000520233 CRAMP1Q96RY5 1269 aa22.16■■□□□ 1.14
SDC2-205ENST00000520233 CDC5LQ99459 802 aaKnown RBP22.16■■□□□ 1.14
SDC2-205ENST00000520233 PPP1R1BQ9UD71 204 aaPredicted RBP22.16■■□□□ 1.14
SDC2-205ENST00000520233 CHRNA5P30532 468 aa22.15■■□□□ 1.14
SDC2-205ENST00000520233 KLHL34Q8N239 644 aa22.15■■□□□ 1.14
SDC2-205ENST00000520233 ALDH1B1P30837 517 aa22.14■■□□□ 1.13
SDC2-205ENST00000520233 PTPN12Q05209 780 aaKnown RBP22.14■■□□□ 1.13
SDC2-205ENST00000520233 HDAC1Q13547 482 aaPredicted RBP22.14■■□□□ 1.13
SDC2-205ENST00000520233 GRAPQ13588 217 aa22.14■■□□□ 1.13
SDC2-205ENST00000520233 GRAPLQ8TC17 118 aaPredicted RBP22.14■■□□□ 1.13
SDC2-205ENST00000520233 COPRSQ9NQ92 184 aa22.14■■□□□ 1.13
SDC2-205ENST00000520233 COL11A2P13942 1736 aaPredicted RBP22.14■■□□□ 1.13
SDC2-205ENST00000520233 DPEP1P16444 411 aa22.13■■□□□ 1.13
SDC2-205ENST00000520233 TAF7LQ5H9L4 462 aa22.13■■□□□ 1.13
SDC2-205ENST00000520233 ANKRD18AQ8IVF6 992 aa22.13■■□□□ 1.13
SDC2-205ENST00000520233 CELF1Q92879 486 aaKnown RBP22.13■■□□□ 1.13
SDC2-205ENST00000520233 RWDD1Q9H446 243 aaPredicted RBP22.13■■□□□ 1.13
SDC2-205ENST00000520233 A0A0G2JLW4 131 aa22.12■■□□□ 1.13
SDC2-205ENST00000520233 KCNA3P22001 575 aa22.12■■□□□ 1.13
SDC2-205ENST00000520233 IGHMBP2P38935 993 aaKnown RBP22.12■■□□□ 1.13
SDC2-205ENST00000520233 RPS8P62241 208 aaKnown RBP22.12■■□□□ 1.13
SDC2-205ENST00000520233 KLHDC4Q8TBB5 520 aa22.12■■□□□ 1.13
SDC2-205ENST00000520233 CNKSR1Q969H4 720 aa22.12■■□□□ 1.13
SDC2-205ENST00000520233 ZNF622Q969S3 477 aaKnown RBP eCLIP22.12■■□□□ 1.13
SDC2-205ENST00000520233 ZNF594Q96JF6 807 aaPredicted RBP22.12■■□□□ 1.13
SDC2-205ENST00000520233 KIAA1551Q9HCM1 1747 aa22.11■■□□□ 1.13
SDC2-205ENST00000520233 LRP5O75197 1615 aa22.11■■□□□ 1.13
SDC2-205ENST00000520233 BBOX1O75936 387 aa22.11■■□□□ 1.13
SDC2-205ENST00000520233 FHDC1Q9C0D6 1143 aaPredicted RBP22.11■■□□□ 1.13
SDC2-205ENST00000520233 PPP4R2Q9NY27 417 aa22.11■■□□□ 1.13
SDC2-205ENST00000520233 FBXO3Q9UK99 471 aa22.11■■□□□ 1.13
SDC2-205ENST00000520233 PA2G4Q9UQ80 394 aaKnown RBP22.11■■□□□ 1.13
SDC2-205ENST00000520233 NOP58Q9Y2X3 529 aaKnown RBP22.11■■□□□ 1.13
SDC2-205ENST00000520233 MPHOSPH8Q99549 860 aa22.1■■□□□ 1.13
SDC2-205ENST00000520233 DLEC1Q9Y238 1755 aa22.1■■□□□ 1.13
SDC2-205ENST00000520233 SURF6O75683 361 aaKnown RBP22.09■■□□□ 1.13
SDC2-205ENST00000520233 IGHDP01880 384 aa22.09■■□□□ 1.13
SDC2-205ENST00000520233 LDHAL6AQ6ZMR3 332 aa22.09■■□□□ 1.13
SDC2-205ENST00000520233 TMC4Q7Z404 712 aa22.09■■□□□ 1.13
SDC2-205ENST00000520233 DCTPP1Q9H773 170 aa22.09■■□□□ 1.13
SDC2-205ENST00000520233 BSDC1Q9NW68 430 aaPredicted RBP22.09■■□□□ 1.13
SDC2-205ENST00000520233 COL4A1P02462 1669 aa22.09■■□□□ 1.13
SDC2-205ENST00000520233 EYA2O00167 538 aa22.08■■□□□ 1.13
SDC2-205ENST00000520233 CIAO1O76071 339 aa22.08■■□□□ 1.13
SDC2-205ENST00000520233 PUS3Q9BZE2 481 aaKnown RBP22.08■■□□□ 1.13
SDC2-205ENST00000520233 PIM2Q9P1W9 311 aa22.08■■□□□ 1.13
SDC2-205ENST00000520233 G3BP1Q13283 466 aaKnown RBP eCLIP22.07■■□□□ 1.12
SDC2-205ENST00000520233 HSP90AB4PQ58FF6 505 aa22.07■■□□□ 1.12
SDC2-205ENST00000520233 TTLL6Q8N841 843 aa22.07■■□□□ 1.12
SDC2-205ENST00000520233 NLGN2Q8NFZ4 835 aa22.07■■□□□ 1.12
SDC2-205ENST00000520233 SYT17Q9BSW7 474 aa22.07■■□□□ 1.12
SDC2-205ENST00000520233 SIL1Q9H173 461 aa22.07■■□□□ 1.12
SDC2-205ENST00000520233 CNNM1Q9NRU3 951 aa22.07■■□□□ 1.12
SDC2-205ENST00000520233 PPEF1O14829 653 aaPredicted RBP22.06■■□□□ 1.12
SDC2-205ENST00000520233 LRRC24Q50LG9 513 aa22.06■■□□□ 1.12
SDC2-205ENST00000520233 PRPF40BQ6NWY9 871 aaKnown RBP22.06■■□□□ 1.12
SDC2-205ENST00000520233 ATG9AQ7Z3C6 839 aa22.06■■□□□ 1.12
SDC2-205ENST00000520233 CCDC136Q96JN2 1154 aa22.06■■□□□ 1.12
SDC2-205ENST00000520233 EXOC6BQ9Y2D4 811 aa22.06■■□□□ 1.12
SDC2-205ENST00000520233 RIPOR2Q9Y4F9 1068 aa22.06■■□□□ 1.12
SDC2-205ENST00000520233 TAF1P21675 1872 aa22.05■■□□□ 1.12
SDC2-205ENST00000520233 IL15P40933 162 aaPredicted RBP22.05■■□□□ 1.12
SDC2-205ENST00000520233 SP8Q8IXZ3 490 aa22.05■■□□□ 1.12
SDC2-205ENST00000520233 GCC1Q96CN9 775 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms