RNA–Protein interactions for RNA: ENST00000517660.1

PDGFRB-203, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 611 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-203ENST00000517660 CRY2Q49AN0 593 aa13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 CCDC184Q52MB2 194 aa13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 HSP90AB3PQ58FF7 597 aa13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 HDGFL1Q5TGJ6 251 aa13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 USP50Q70EL3 339 aaPredicted RBP13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 RTKN2Q8IZC4 609 aa13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 UTP14AQ9BVJ6 771 aaKnown RBP13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 GLIS2Q9BZE0 524 aaPredicted RBP13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 MBIPQ9NS73 344 aa13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 IFT57Q9NWB7 429 aa13.73□□□□□ -0.21
PDGFRB-203ENST00000517660 IBTKQ9P2D0 1353 aaPredicted RBP13.72□□□□□ -0.21
PDGFRB-203ENST00000517660 FAM155AB1AL88 458 aaPredicted RBP13.72□□□□□ -0.21
PDGFRB-203ENST00000517660 ANP32CO43423 234 aa13.72□□□□□ -0.21
PDGFRB-203ENST00000517660 NTSR2O95665 410 aa13.72□□□□□ -0.21
PDGFRB-203ENST00000517660 DUSP27Q5VZP5 1158 aa13.72□□□□□ -0.21
PDGFRB-203ENST00000517660 CHPF2Q9P2E5 772 aa13.72□□□□□ -0.21
PDGFRB-203ENST00000517660 DBF4Q9UBU7 674 aaPredicted RBP13.72□□□□□ -0.21
PDGFRB-203ENST00000517660 LMOD1P29536 600 aaPredicted RBP13.71□□□□□ -0.21
PDGFRB-203ENST00000517660 HOXA10P31260 410 aaPredicted RBP13.71□□□□□ -0.21
PDGFRB-203ENST00000517660 TCIRG1Q13488 830 aa13.71□□□□□ -0.21
PDGFRB-203ENST00000517660 SLC10A5Q5PT55 438 aa13.71□□□□□ -0.21
PDGFRB-203ENST00000517660 RPGRQ92834 1020 aaKnown RBP13.71□□□□□ -0.21
PDGFRB-203ENST00000517660 PSMD1Q99460 953 aa13.71□□□□□ -0.21
PDGFRB-203ENST00000517660 LAMB4A4D0S4 1761 aa13.71□□□□□ -0.22
PDGFRB-203ENST00000517660 ABCC12Q96J65 1359 aa13.71□□□□□ -0.22
PDGFRB-203ENST00000517660 NOGQ13253 232 aa13.7□□□□□ -0.22
PDGFRB-203ENST00000517660 DLK2Q6UY11 383 aa13.7□□□□□ -0.22
PDGFRB-203ENST00000517660 RBM17Q96I25 401 aaKnown RBP13.7□□□□□ -0.22
PDGFRB-203ENST00000517660 NLRP3Q96P20 1036 aa13.7□□□□□ -0.22
PDGFRB-203ENST00000517660 HYPKQ9NX55 129 aa13.7□□□□□ -0.22
PDGFRB-203ENST00000517660 PGAP2Q9UHJ9 254 aa13.7□□□□□ -0.22
PDGFRB-203ENST00000517660 HPS5Q9UPZ3 1129 aa13.7□□□□□ -0.22
PDGFRB-203ENST00000517660 FXR1P51114 621 aaKnown RBP eCLIP13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 EIF6P56537 245 aaKnown RBP13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 CC2D2BQ6DHV5 1058 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 ANKRD13DQ6ZTN6 518 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 NLRP10Q86W26 655 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 PLBD2Q8NHP8 589 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 CRAMP1Q96RY5 1269 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 CHMP4AQ9BY43 222 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 SAGE1Q9NXZ1 904 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 SZT2Q5T011 3432 aa13.69□□□□□ -0.22
PDGFRB-203ENST00000517660 RIC1Q4ADV7 1423 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 HIRAP54198 1017 aaPredicted RBP13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 CCDC27Q2M243 656 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 JDP2Q8WYK2 163 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 GCC1Q96CN9 775 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 MRS2Q9HD23 443 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 ADARB2Q9NS39 739 aaKnown RBP13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 RNF186Q9NXI6 227 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 GPRC5DQ9NZD1 345 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 HTTP42858 3142 aa13.68□□□□□ -0.22
PDGFRB-203ENST00000517660 ELL2O00472 640 aaPredicted RBP13.67□□□□□ -0.22
PDGFRB-203ENST00000517660 GRIPAP1Q4V328 841 aa13.67□□□□□ -0.22
PDGFRB-203ENST00000517660 NCBP3Q53F19 620 aaKnown RBP13.67□□□□□ -0.22
PDGFRB-203ENST00000517660 C3orf67Q6ZVT6 689 aa13.67□□□□□ -0.22
PDGFRB-203ENST00000517660 CTU1Q7Z7A3 348 aaKnown RBP13.67□□□□□ -0.22
PDGFRB-203ENST00000517660 ZNF408Q9H9D4 720 aa13.67□□□□□ -0.22
PDGFRB-203ENST00000517660 TRMT112Q9UI30 125 aaKnown RBP13.67□□□□□ -0.22
PDGFRB-203ENST00000517660 TRPA1O75762 1119 aa13.66□□□□□ -0.22
PDGFRB-203ENST00000517660 C8orf58Q8NAV2 365 aa13.66□□□□□ -0.22
PDGFRB-203ENST00000517660 ISCA1Q9BUE6 129 aa13.66□□□□□ -0.22
PDGFRB-203ENST00000517660 SH3TC1Q8TE82 1336 aa13.65□□□□□ -0.22
PDGFRB-203ENST00000517660 HCLS1P14317 486 aaPredicted RBP13.65□□□□□ -0.22
PDGFRB-203ENST00000517660 KIF23Q02241 960 aaPredicted RBP13.65□□□□□ -0.22
PDGFRB-203ENST00000517660 TRIM28Q13263 835 aaKnown RBP13.65□□□□□ -0.22
PDGFRB-203ENST00000517660 WWC1Q8IX03 1113 aa13.65□□□□□ -0.22
PDGFRB-203ENST00000517660 TMX4Q9H1E5 349 aaPredicted RBP13.65□□□□□ -0.22
PDGFRB-203ENST00000517660 PPEF1O14829 653 aaPredicted RBP13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 BBOX1O75936 387 aa13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 HUNKP57058 714 aa13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 GOLGA2Q08379 1002 aa13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 CCDC30Q5VVM6 783 aa13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 RIC3Q7Z5B4 369 aa13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 TRPM4Q8TD43 1214 aa13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 BRCA2P51587 3418 aa13.64□□□□□ -0.23
PDGFRB-203ENST00000517660 NUP98P52948 1817 aa13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 SHTN1A0MZ66 631 aa13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 ATP5J2-PTCD1G3V325 749 aa13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 TCERG1O14776 1098 aaKnown RBP13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 LARGE2Q8N3Y3 721 aa13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 PHAXQ9H814 394 aaKnown RBP13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 ATP6V0A2Q9Y487 856 aa13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 IL16Q14005 1332 aa13.63□□□□□ -0.23
PDGFRB-203ENST00000517660 GMPSP49915 693 aaPredicted RBP13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 CXCL9Q07325 125 aa13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 RGMBQ6NW40 437 aa13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 DDX46Q7L014 1031 aaKnown RBP13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 TSPYL6Q8N831 410 aa13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 TSR2Q969E8 191 aaKnown RBP13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 CSRNP1Q96S65 589 aa13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 ABCC4O15439 1325 aa13.62□□□□□ -0.23
PDGFRB-203ENST00000517660 DDX58O95786 925 aaKnown RBP13.61□□□□□ -0.23
PDGFRB-203ENST00000517660 SP8Q8IXZ3 490 aa13.61□□□□□ -0.23
PDGFRB-203ENST00000517660 FAM89AQ96GI7 184 aa13.61□□□□□ -0.23
PDGFRB-203ENST00000517660 GRAPQ13588 217 aa13.6□□□□□ -0.23
PDGFRB-203ENST00000517660 SF3B3Q15393 1217 aaKnown RBP13.6□□□□□ -0.23
PDGFRB-203ENST00000517660 CDC37L1Q7L3B6 337 aa13.6□□□□□ -0.23
PDGFRB-203ENST00000517660 USP48Q86UV5 1035 aa13.6□□□□□ -0.23
PDGFRB-203ENST00000517660 WDR63Q8IWG1 891 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms