RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 SSH1Q8WYL5 1049 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 MYD88Q99836 296 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 ISCA1Q9BUE6 129 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 METTL22Q9BUU2 404 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 UTP14AQ9BVJ6 771 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 BRIP1Q9BX63 1249 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 CHMP4BQ9H444 224 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 CWC25Q9NXE8 425 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 MAP3K2Q9Y2U5 619 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 SH3TC1Q8TE82 1336 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 KCNA3P22001 575 aa9.79□□□□□ -0.84
LIMCH1-222ENST00000515847 TIE1P35590 1138 aa9.79□□□□□ -0.84
LIMCH1-222ENST00000515847 CCT4P50991 539 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-222ENST00000515847 GPR162Q16538 588 aa9.79□□□□□ -0.84
LIMCH1-222ENST00000515847 FAM212AQ96EL1 285 aa9.79□□□□□ -0.84
LIMCH1-222ENST00000515847 BCL2L13Q9BXK5 485 aa9.79□□□□□ -0.84
LIMCH1-222ENST00000515847 RCAN3Q9UKA8 241 aa9.79□□□□□ -0.84
LIMCH1-222ENST00000515847 LAMB2P55268 1798 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 ARFGEF1Q9Y6D6 1849 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 H0YIN7 160 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 ALDH1L1O75891 902 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 ZKSCAN2Q63HK3 967 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 SRCIN1Q9C0H9 1055 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 TMX4Q9H1E5 349 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 TRMT112Q9UI30 125 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 PCDHB13Q9Y5F0 798 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 DDX60Q8IY21 1712 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 CACNA1SQ13698 1873 aa9.78□□□□□ -0.84
LIMCH1-222ENST00000515847 F6X3S4 739 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 IGKV5-2P06315 115 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 SLC4A10Q6U841 1118 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 ATF7IPQ6VMQ6 1270 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 C3orf67Q6ZVT6 689 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 SYNE4Q8N205 404 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 PIM2Q9P1W9 311 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 BCS1LQ9Y276 419 aa9.77□□□□□ -0.85
LIMCH1-222ENST00000515847 KLRG2A4D1S0 409 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 PCCAP05165 728 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 SRGNP10124 158 aa9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 HCLS1P14317 486 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 CWF19L2Q2TBE0 894 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 DALRD3Q5D0E6 543 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 RTL5Q5HYW3 569 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 ZBTB38Q8NAP3 1195 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 FRAT1Q92837 279 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 ZNF622Q969S3 477 aaKnown RBP eCLIP9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 FAM89AQ96GI7 184 aa9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 NLRP3Q96P20 1036 aa9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 CDHR2Q9BYE9 1310 aa9.76□□□□□ -0.85
LIMCH1-222ENST00000515847 SLX4Q8IY92 1834 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 NEURL1BA8MQ27 555 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 NPR1P16066 1061 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 CRY2Q49AN0 593 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 SOGA3Q5TF21 947 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 STYK1Q6J9G0 422 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 TTLL6Q8N841 843 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 RPGRQ92834 1020 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 MASTLQ96GX5 879 aa9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 C9orf78Q9NZ63 289 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 NOB1Q9ULX3 412 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-222ENST00000515847 TTLL13PA6NNM8 815 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 GRIN3BO60391 1043 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 CENPBP07199 599 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 GNAI3P08754 354 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 POTEJP0CG39 1038 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 CCDC152Q4G0S7 254 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 SLC10A5Q5PT55 438 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 PRPF40BQ6NWY9 871 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 TMC4Q7Z404 712 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 DZIP1LQ8IYY4 767 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 JARID2Q92833 1246 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 CNKSR1Q969H4 720 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 RBM17Q96I25 401 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 ABCC4O15439 1325 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 CHD4Q14839 1912 aa9.74□□□□□ -0.85
LIMCH1-222ENST00000515847 GRM8O00222 908 aa9.73□□□□□ -0.85
LIMCH1-222ENST00000515847 IRS4O14654 1257 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-222ENST00000515847 ALDH1B1P30837 517 aa9.73□□□□□ -0.85
LIMCH1-222ENST00000515847 GCKRQ14397 625 aa9.73□□□□□ -0.85
LIMCH1-222ENST00000515847 GRIPAP1Q4V328 841 aa9.73□□□□□ -0.85
LIMCH1-222ENST00000515847 BEND3Q5T5X7 828 aa9.73□□□□□ -0.85
LIMCH1-222ENST00000515847 MYH3P11055 1940 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 PDE8AO60658 829 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 BCAR3O75815 825 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 UBTFL1P0CB47 393 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 TRIM27P14373 513 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 HOXA10P31260 410 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 DCAF8Q5TAQ9 597 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 DDX46Q7L014 1031 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 UBE3BQ7Z3V4 1068 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 IFNL1Q8IU54 200 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 CDC5LQ99459 802 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 TAF1P21675 1872 aa9.72□□□□□ -0.85
LIMCH1-222ENST00000515847 COL4A1P02462 1669 aa9.71□□□□□ -0.85
LIMCH1-222ENST00000515847 POTEFA5A3E0 1075 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 H7C1W4 665 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 C21orf2O43822 256 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 VASPP50552 380 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 CASP7P55210 303 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 CTSWP56202 376 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms