RNA–Protein interactions for RNA: ENST00000514830.5

PDLIM5-220, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-220ENST00000514830 RPAP2Q8IXW5 612 aaPredicted RBP15□□□□□ -0.01
PDLIM5-220ENST00000514830 SYNE4Q8N205 404 aa15□□□□□ -0.01
PDLIM5-220ENST00000514830 ANKRD44Q8N8A2 993 aa15□□□□□ -0.01
PDLIM5-220ENST00000514830 LRRFIP2Q9Y608 721 aaKnown RBP15□□□□□ -0.01
PDLIM5-220ENST00000514830 CTSWP56202 376 aa14.99□□□□□ -0.01
PDLIM5-220ENST00000514830 NLRP3Q96P20 1036 aa14.99□□□□□ -0.01
PDLIM5-220ENST00000514830 BICC1Q9H694 974 aaKnown RBP14.99□□□□□ -0.01
PDLIM5-220ENST00000514830 BRCA1P38398 1863 aaKnown RBP14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 FAM177BA6PVY3 158 aa14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 IRX6P78412 446 aaPredicted RBP14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 EPHA10Q5JZY3 1008 aa14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 CEP85Q6P2H3 762 aa14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 KLHL34Q8N239 644 aa14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 TTLL11Q8NHH1 800 aa14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 JARID2Q92833 1246 aaPredicted RBP14.98□□□□□ -0.01
PDLIM5-220ENST00000514830 NPHP1O15259 732 aa14.97□□□□□ -0.01
PDLIM5-220ENST00000514830 HCLS1P14317 486 aaPredicted RBP14.97□□□□□ -0.01
PDLIM5-220ENST00000514830 HOXA10P31260 410 aaPredicted RBP14.97□□□□□ -0.01
PDLIM5-220ENST00000514830 PDE6BP35913 854 aa14.97□□□□□ -0.01
PDLIM5-220ENST00000514830 ATP8B2P98198 1209 aa14.97□□□□□ -0.01
PDLIM5-220ENST00000514830 RTL5Q5HYW3 569 aaPredicted RBP14.97□□□□□ -0.01
PDLIM5-220ENST00000514830 POLA2Q14181 598 aa14.96□□□□□ -0.01
PDLIM5-220ENST00000514830 CCDC152Q4G0S7 254 aa14.96□□□□□ -0.01
PDLIM5-220ENST00000514830 LMBR1LQ6UX01 489 aa14.96□□□□□ -0.01
PDLIM5-220ENST00000514830 PELP1Q8IZL8 1130 aaKnown RBP14.96□□□□□ -0.01
PDLIM5-220ENST00000514830 SSH3Q8TE77 659 aa14.96□□□□□ -0.01
PDLIM5-220ENST00000514830 CD2APQ9Y5K6 639 aa14.96□□□□□ -0.01
PDLIM5-220ENST00000514830 TAF1P21675 1872 aa14.95□□□□□ -0.02
PDLIM5-220ENST00000514830 HDAC1Q13547 482 aaPredicted RBP14.95□□□□□ -0.02
PDLIM5-220ENST00000514830 C3orf67Q6ZVT6 689 aa14.95□□□□□ -0.02
PDLIM5-220ENST00000514830 PCDHB15Q9Y5E8 787 aa14.95□□□□□ -0.02
PDLIM5-220ENST00000514830 SPEF2Q9C093 1822 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 A0A1B0GUL6 1792 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 GRIN3BO60391 1043 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 HMMRO75330 724 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 RFX5P48382 616 aaPredicted RBP14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 SIRT2Q8IXJ6 389 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 C1orf115Q9H7X2 142 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 LRRC37AA6NMS7 1700 aa14.94□□□□□ -0.02
PDLIM5-220ENST00000514830 SRGNP10124 158 aa14.93□□□□□ -0.02
PDLIM5-220ENST00000514830 TGFB2P61812 414 aa14.93□□□□□ -0.02
PDLIM5-220ENST00000514830 CRAMP1Q96RY5 1269 aa14.93□□□□□ -0.02
PDLIM5-220ENST00000514830 COPRSQ9NQ92 184 aa14.93□□□□□ -0.02
PDLIM5-220ENST00000514830 PNMA6EA0A0J9YXQ4 647 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 SRGAP3O43295 1099 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 NPR1P16066 1061 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 IFIT5Q13325 482 aaKnown RBP14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 FAM161AQ3B820 660 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 STYK1Q6J9G0 422 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 CCDC24Q8N4L8 307 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 GREM2Q9H772 168 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 NOP58Q9Y2X3 529 aaKnown RBP14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 CACNA1SQ13698 1873 aa14.92□□□□□ -0.02
PDLIM5-220ENST00000514830 ANKRD18BA2A2Z9 1011 aa14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 H0YIN7 160 aa14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 ITGA6P23229 1130 aa14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 PTPN12Q05209 780 aaKnown RBP14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 CCDC57Q2TAC2 916 aa14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 TMC4Q7Z404 712 aa14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 RPGRQ92834 1020 aaKnown RBP14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 MASTLQ96GX5 879 aa14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 RBM17Q96I25 401 aaKnown RBP14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 CDC5LQ99459 802 aaKnown RBP14.91□□□□□ -0.02
PDLIM5-220ENST00000514830 COL4A1P02462 1669 aa14.9□□□□□ -0.02
PDLIM5-220ENST00000514830 ARFGEF1Q9Y6D6 1849 aa14.9□□□□□ -0.02
PDLIM5-220ENST00000514830 DDX46Q7L014 1031 aaKnown RBP14.9□□□□□ -0.02
PDLIM5-220ENST00000514830 RWDD1Q9H446 243 aaPredicted RBP14.9□□□□□ -0.02
PDLIM5-220ENST00000514830 PPP4R2Q9NY27 417 aa14.9□□□□□ -0.02
PDLIM5-220ENST00000514830 CIAO1O76071 339 aa14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 ALDH1B1P30837 517 aa14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 GRAPQ13588 217 aa14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 C2CD5Q86YS7 1000 aa14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 GRAPLQ8TC17 118 aaPredicted RBP14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 DCTPP1Q9H773 170 aa14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 SLX4Q8IY92 1834 aa14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 LTBP1Q14766 1721 aa14.89□□□□□ -0.03
PDLIM5-220ENST00000514830 BBOX1O75936 387 aa14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 KCNA3P22001 575 aa14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 RPS8P62241 208 aaKnown RBP14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 HSP90AB4PQ58FF6 505 aa14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 CNKSR1Q969H4 720 aa14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 SEC31BQ9NQW1 1179 aa14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 BSDC1Q9NW68 430 aaPredicted RBP14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 CHMP3Q9Y3E7 222 aa14.88□□□□□ -0.03
PDLIM5-220ENST00000514830 EYA2O00167 538 aa14.87□□□□□ -0.03
PDLIM5-220ENST00000514830 ANKRD18AQ8IVF6 992 aa14.87□□□□□ -0.03
PDLIM5-220ENST00000514830 GCC1Q96CN9 775 aa14.87□□□□□ -0.03
PDLIM5-220ENST00000514830 DPEP1P16444 411 aa14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 IGHMBP2P38935 993 aaKnown RBP14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 SMC5Q8IY18 1101 aa14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 CELF1Q92879 486 aaKnown RBP14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 CCDC85AQ96PX6 553 aaPredicted RBP14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 RIPOR2Q9Y4F9 1068 aa14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 KDM2BQ8NHM5 1336 aa14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 ARAP2Q8WZ64 1704 aa14.86□□□□□ -0.03
PDLIM5-220ENST00000514830 RAB11FIP3O75154 756 aa14.85□□□□□ -0.03
PDLIM5-220ENST00000514830 IGHDP01880 384 aa14.85□□□□□ -0.03
PDLIM5-220ENST00000514830 CHRNA5P30532 468 aa14.85□□□□□ -0.03
PDLIM5-220ENST00000514830 IL15P40933 162 aaPredicted RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms