RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 UTP14AQ9BVJ6 771 aaKnown RBP11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 PRG4Q92954 1404 aaPredicted RBP11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 BICRAQ9NZM4 1560 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 RHPN1Q8TCX5 695 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 ZNF526Q8TF50 670 aaPredicted RBP11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 CTAGE1Q96RT6 745 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 TCP11L1Q9NUJ3 509 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 GUCA1BQ9UMX6 200 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 RBM8AQ9Y5S9 174 aaKnown RBP11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 KLF18A0A0U1RQI7 1052 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 NEBLO76041 1014 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 CTNNA2P26232 953 aa11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 IGHMBP2P38935 993 aaKnown RBP11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 NSRP1Q9H0G5 558 aaKnown RBP11.85□□□□□ -0.51
PDLIM3-209ENST00000514142 PPP2R3AQ06190 1150 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 NME9Q86XW9 330 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 A0A1W2PRG0 241 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 RBM5P52756 815 aaKnown RBP eCLIP11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 MAP3K12Q12852 859 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 NAA25Q14CX7 972 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 TOM1L2Q6ZVM7 507 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 NUDT16Q96DE0 195 aaKnown RBP11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 PHF23Q9BUL5 403 aaPredicted RBP11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 HOMER2Q9NSB8 354 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 CC2D2AQ9P2K1 1620 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 TACC1O75410 805 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 RLBP1P12271 317 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 HDXQ7Z353 690 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 CPLX4Q7Z7G2 160 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 CATIPQ7Z7H3 387 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 ANKS4BQ8N8V4 417 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 TSC1Q92574 1164 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 RTL1A6NKG5 1358 aa11.84□□□□□ -0.51
PDLIM3-209ENST00000514142 AMPD3Q01432 767 aa11.83□□□□□ -0.51
PDLIM3-209ENST00000514142 FAM76AQ8TAV0 307 aa11.83□□□□□ -0.51
PDLIM3-209ENST00000514142 NPHP3Q7Z494 1330 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 CCDC160A6NGH7 325 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 KIF4AO95239 1232 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 ELF2Q15723 593 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 USHBP1Q8N6Y0 703 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 NCOA7Q8NI08 942 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 CALML4Q96GE6 196 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 CCDC61Q9Y6R9 512 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 TOP2BQ02880 1626 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 AK2P54819 239 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 SPATA24Q86W54 205 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 SELENOSQ9BQE4 189 aa11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 RNF41Q9H4P4 317 aaPredicted RBP11.83□□□□□ -0.52
PDLIM3-209ENST00000514142 MPHOSPH10O00566 681 aaKnown RBP11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 PTCD1O75127 700 aaKnown RBP11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 GABPB1Q06547 395 aaPredicted RBP11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 Q6ZUG5 572 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 DDX46Q7L014 1031 aaKnown RBP11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 IFT81Q8WYA0 676 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 ALG1Q9BT22 464 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 A0A087WZG4 1122 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 PRC1O43663 620 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 SPAG1Q07617 926 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 ANKRD44Q8N8A2 993 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 SPTLC2O15270 562 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 KRT86O43790 486 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 STX17P56962 302 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 KIF5AQ12840 1032 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 SPAG5Q96R06 1193 aa11.82□□□□□ -0.52
PDLIM3-209ENST00000514142 IFIT5Q13325 482 aaKnown RBP11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 IFI16Q16666 785 aaKnown RBP11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 DBF4Q9UBU7 674 aaPredicted RBP11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 HMGXB3Q12766 1538 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 PI4KAP2A4QPH2 592 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 SMIM23A6NLE4 172 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 MXRA7P84157 204 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 CCDC129Q6ZRS4 1044 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 PI4KAP1Q8N8J0 262 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 ARHGAP45Q92619 1136 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 MAP3K2Q9Y2U5 619 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 PYM1Q9BRP8 204 aaKnown RBP11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 RMND1Q9NWS8 449 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 DISP3Q9P2K9 1392 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 TLDC2A0PJX2 215 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 MPRIPQ6WCQ1 1025 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 WAPLQ7Z5K2 1190 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 THEMISQ8N1K5 641 aaPredicted RBP11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 RSRC1Q96IZ7 334 aaKnown RBP11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 RABEP2Q9H5N1 569 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 EXOC1Q9NV70 894 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 TOPBP1Q92547 1522 aa11.81□□□□□ -0.52
PDLIM3-209ENST00000514142 KRT83P78385 493 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 BICDL1Q6ZP65 573 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 CEP83Q9Y592 693 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 CETN1Q12798 172 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 PPP1R14CQ8TAE6 165 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 SLC52A1Q9NWF4 448 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 VAV2P52735 878 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 TERF1P54274 439 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 ZNF444Q8N0Y2 327 aaPredicted RBP11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 ARFGAP2Q8N6H7 521 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 INTS4Q96HW7 963 aaKnown RBP11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 SELENOOQ9BVL4 669 aa11.8□□□□□ -0.52
PDLIM3-209ENST00000514142 CARD6Q9BX69 1037 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms