RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 GPR108Q9NPR9 543 aa11.03□□□□□ -0.64
CPNE4-210ENST00000512332 TPCN1Q9ULQ1 816 aa11.03□□□□□ -0.64
CPNE4-210ENST00000512332 CNPY2Q9Y2B0 182 aa11.03□□□□□ -0.64
CPNE4-210ENST00000512332 RPS6KB1P23443 525 aa11.03□□□□□ -0.64
CPNE4-210ENST00000512332 MSNP26038 577 aaKnown RBP11.03□□□□□ -0.64
CPNE4-210ENST00000512332 TFCP2Q12800 502 aa11.03□□□□□ -0.64
CPNE4-210ENST00000512332 CHRNA2Q15822 529 aa11.03□□□□□ -0.64
CPNE4-210ENST00000512332 LARP6Q9BRS8 491 aaKnown RBP11.03□□□□□ -0.64
CPNE4-210ENST00000512332 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.03□□□□□ -0.64
CPNE4-210ENST00000512332 PCDH11XQ9BZA7 1347 aa11.02□□□□□ -0.64
CPNE4-210ENST00000512332 PCDH11YQ9BZA8 1340 aa11.02□□□□□ -0.64
CPNE4-210ENST00000512332 ZNF500O60304 480 aaPredicted RBP11.02□□□□□ -0.65
CPNE4-210ENST00000512332 AFDNP55196 1824 aaKnown RBP11.02□□□□□ -0.65
CPNE4-210ENST00000512332 WDR17Q8IZU2 1322 aa11.02□□□□□ -0.65
CPNE4-210ENST00000512332 FOXO4P98177 505 aa11.01□□□□□ -0.65
CPNE4-210ENST00000512332 ZNF589Q86UQ0 364 aaPredicted RBP11.01□□□□□ -0.65
CPNE4-210ENST00000512332 ATG3Q9NT62 314 aa11.01□□□□□ -0.65
CPNE4-210ENST00000512332 CCDC39Q9UFE4 941 aa11.01□□□□□ -0.65
CPNE4-210ENST00000512332 U3KPZ7 1027 aaPredicted RBP11.01□□□□□ -0.65
CPNE4-210ENST00000512332 NBPF26B4DH59 902 aa11.01□□□□□ -0.65
CPNE4-210ENST00000512332 NBPF14Q5TI25 921 aa11.01□□□□□ -0.65
CPNE4-210ENST00000512332 LARP1BQ659C4 914 aaKnown RBP11.01□□□□□ -0.65
CPNE4-210ENST00000512332 NBPF10Q6P3W6 841 aaKnown RBP11.01□□□□□ -0.65
CPNE4-210ENST00000512332 NBPF15Q8N660 670 aa11.01□□□□□ -0.65
CPNE4-210ENST00000512332 ZCRB1Q8TBF4 217 aaKnown RBP11.01□□□□□ -0.65
CPNE4-210ENST00000512332 ATP5J2-PTCD1G3V325 749 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 PTCD1O75127 700 aaKnown RBP11□□□□□ -0.65
CPNE4-210ENST00000512332 TOB2Q14106 344 aaPredicted RBP11□□□□□ -0.65
CPNE4-210ENST00000512332 FOXD4L6Q3SYB3 417 aaPredicted RBP11□□□□□ -0.65
CPNE4-210ENST00000512332 MCMDC2Q4G0Z9 681 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 LMBR1LQ6UX01 489 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 FOXD4L3Q6VB84 417 aaPredicted RBP11□□□□□ -0.65
CPNE4-210ENST00000512332 ELP1O95163 1332 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 UBR2Q8IWV8 1755 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 OFD1O75665 1012 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 TERF1P54274 439 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 KBTBD3Q8NAB2 608 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 CCDC191Q8NCU4 936 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 NAP1L5Q96NT1 182 aaPredicted RBP11□□□□□ -0.65
CPNE4-210ENST00000512332 DBNDD2Q9BQY9 259 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 CWC25Q9NXE8 425 aaPredicted RBP11□□□□□ -0.65
CPNE4-210ENST00000512332 ZKSCAN5Q9Y2L8 839 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 SH3TC1Q8TE82 1336 aa11□□□□□ -0.65
CPNE4-210ENST00000512332 CIAO1O76071 339 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 IL15P40933 162 aaPredicted RBP10.99□□□□□ -0.65
CPNE4-210ENST00000512332 PIP4K2AP48426 406 aaPredicted RBP10.99□□□□□ -0.65
CPNE4-210ENST00000512332 DNM1Q05193 864 aaKnown RBP10.99□□□□□ -0.65
CPNE4-210ENST00000512332 ATG9AQ7Z3C6 839 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 NECAB1Q8N987 351 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 NEK1Q96PY6 1258 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.99□□□□□ -0.65
CPNE4-210ENST00000512332 PALLDQ8WX93 1383 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 HMGB1P09429 215 aaKnown RBP10.99□□□□□ -0.65
CPNE4-210ENST00000512332 BRINP3Q76B58 766 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 RNF214Q8ND24 703 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 JARID2Q92833 1246 aaPredicted RBP10.99□□□□□ -0.65
CPNE4-210ENST00000512332 EDC3Q96F86 508 aaKnown RBP10.99□□□□□ -0.65
CPNE4-210ENST00000512332 HELLSQ9NRZ9 838 aa10.99□□□□□ -0.65
CPNE4-210ENST00000512332 ZNF609O15014 1411 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 KCPQ6ZWJ8 1503 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 FIBPO43427 364 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 KRT85P78386 507 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.98□□□□□ -0.65
CPNE4-210ENST00000512332 FUCA2Q9BTY2 467 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 CARD10Q9BWT7 1032 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 FBXO3Q9UK99 471 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 SOS2Q07890 1332 aaPredicted RBP10.98□□□□□ -0.65
CPNE4-210ENST00000512332 NUP188Q5SRE5 1749 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 TNS2Q63HR2 1409 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 PAPPAQ13219 1627 aa10.98□□□□□ -0.65
CPNE4-210ENST00000512332 VPS37CA5D8V6 355 aaPredicted RBP10.97□□□□□ -0.65
CPNE4-210ENST00000512332 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.97□□□□□ -0.65
CPNE4-210ENST00000512332 SCAND2PQ9GZW5 306 aaPredicted RBP10.97□□□□□ -0.65
CPNE4-210ENST00000512332 TAF6LQ9Y6J9 622 aa10.97□□□□□ -0.65
CPNE4-210ENST00000512332 COL5A2P05997 1499 aaPredicted RBP10.97□□□□□ -0.65
CPNE4-210ENST00000512332 EYA2O00167 538 aa10.97□□□□□ -0.65
CPNE4-210ENST00000512332 IL2RBP14784 551 aa10.97□□□□□ -0.65
CPNE4-210ENST00000512332 TRIM28Q13263 835 aaKnown RBP10.97□□□□□ -0.65
CPNE4-210ENST00000512332 COL9A3Q14050 684 aaPredicted RBP10.97□□□□□ -0.65
CPNE4-210ENST00000512332 TTLL7Q6ZT98 887 aa10.97□□□□□ -0.65
CPNE4-210ENST00000512332 TOM1L2Q6ZVM7 507 aa10.97□□□□□ -0.65
CPNE4-210ENST00000512332 DDX54Q8TDD1 881 aaKnown RBP10.97□□□□□ -0.65
CPNE4-210ENST00000512332 DSCC1Q9BVC3 393 aa10.97□□□□□ -0.65
CPNE4-210ENST00000512332 PRDM11Q9NQV5 511 aa10.97□□□□□ -0.65
CPNE4-210ENST00000512332 TPM2P07951 284 aa10.96□□□□□ -0.65
CPNE4-210ENST00000512332 CYP21A2P08686 494 aa10.96□□□□□ -0.65
CPNE4-210ENST00000512332 GTF3C6Q969F1 213 aa10.96□□□□□ -0.65
CPNE4-210ENST00000512332 DNAJC2Q99543 621 aaKnown RBP10.96□□□□□ -0.65
CPNE4-210ENST00000512332 LLPHQ9BRT6 129 aaKnown RBP10.96□□□□□ -0.65
CPNE4-210ENST00000512332 SPEF2Q9C093 1822 aa10.96□□□□□ -0.66
CPNE4-210ENST00000512332 CDC37L1Q7L3B6 337 aa10.96□□□□□ -0.66
CPNE4-210ENST00000512332 AGXT2Q9BYV1 514 aa10.96□□□□□ -0.66
CPNE4-210ENST00000512332 PAG1Q9NWQ8 432 aa10.96□□□□□ -0.66
CPNE4-210ENST00000512332 A1BGP04217 495 aa10.95□□□□□ -0.66
CPNE4-210ENST00000512332 ZMYM1Q5SVZ6 1142 aa10.95□□□□□ -0.66
CPNE4-210ENST00000512332 TTC6Q86TZ1 520 aa10.95□□□□□ -0.66
CPNE4-210ENST00000512332 ISCA1Q9BUE6 129 aa10.95□□□□□ -0.66
CPNE4-210ENST00000512332 TJP1Q07157 1748 aa10.95□□□□□ -0.66
CPNE4-210ENST00000512332 DDX46Q7L014 1031 aaKnown RBP10.94□□□□□ -0.66
CPNE4-210ENST00000512332 DHX32Q7L7V1 743 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms