RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 LRP6O75581 1613 aa11.77□□□□□ -0.53
USP53-207ENST00000510852 ATG7O95352 703 aa11.77□□□□□ -0.53
USP53-207ENST00000510852 TMPOP42166 694 aaKnown RBP11.77□□□□□ -0.53
USP53-207ENST00000510852 RASSF7Q02833 373 aa11.77□□□□□ -0.53
USP53-207ENST00000510852 JAZF1Q86VZ6 243 aa11.77□□□□□ -0.53
USP53-207ENST00000510852 RSPH1Q8WYR4 309 aa11.77□□□□□ -0.53
USP53-207ENST00000510852 HDLBPQ00341 1268 aaKnown RBP11.76□□□□□ -0.53
USP53-207ENST00000510852 TTC39BQ5VTQ0 682 aaPredicted RBP11.76□□□□□ -0.53
USP53-207ENST00000510852 TCEAL9Q9UHQ7 104 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 RGPD2P0DJD1 1756 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 VGLL3A8MV65 326 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 S100BP04271 92 aaPredicted RBP11.76□□□□□ -0.53
USP53-207ENST00000510852 NFE2L2Q16236 605 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 NGEFQ8N5V2 710 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 TMC2Q8TDI7 906 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 PIK3R5Q8WYR1 880 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 EPAS1Q99814 870 aa11.76□□□□□ -0.53
USP53-207ENST00000510852 FAM163BP0C2L3 166 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 ZKSCAN8Q15776 578 aaPredicted RBP11.75□□□□□ -0.53
USP53-207ENST00000510852 AMHR2Q16671 573 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 NGLY1Q96IV0 654 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 GDPD2Q9HCC8 539 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 TBC1D2BQ9UPU7 963 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 CBFA2T2O43439 604 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 PRC1O43663 620 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 IGHDP01880 384 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 RIPK4P57078 832 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 CDC5LQ99459 802 aaKnown RBP11.75□□□□□ -0.53
USP53-207ENST00000510852 MUC3BQ9H195 1237 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 SLIT2O94813 1529 aa11.75□□□□□ -0.53
USP53-207ENST00000510852 SPDYE2BA6NHP3 402 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 SPDYE5A6NIY4 337 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 SPDYE6P0CI01 402 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 MTHFSDQ2M296 383 aaKnown RBP11.74□□□□□ -0.53
USP53-207ENST00000510852 SPDYE2Q495Y8 402 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 MEX3CQ5U5Q3 659 aaKnown RBP11.74□□□□□ -0.53
USP53-207ENST00000510852 BRINP2Q9C0B6 783 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 DDX56Q9NY93 547 aaKnown RBP11.74□□□□□ -0.53
USP53-207ENST00000510852 FAM208AQ9UK61 1670 aaKnown RBP11.74□□□□□ -0.53
USP53-207ENST00000510852 CRB1P82279 1406 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 SMAPO00193 183 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 TGFB3P10600 412 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 GTF2F1P35269 517 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP53-207ENST00000510852 UVSSAQ2YD98 709 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 RAPGEF4Q8WZA2 1011 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 CCDC102AQ96A19 550 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 IFT57Q9NWB7 429 aa11.74□□□□□ -0.53
USP53-207ENST00000510852 PLCH1Q4KWH8 1693 aa11.73□□□□□ -0.53
USP53-207ENST00000510852 MARSP56192 900 aaKnown RBP11.73□□□□□ -0.53
USP53-207ENST00000510852 JDP2Q8WYK2 163 aa11.73□□□□□ -0.53
USP53-207ENST00000510852 RAI14Q9P0K7 980 aa11.73□□□□□ -0.53
USP53-207ENST00000510852 TRIM35Q9UPQ4 493 aa11.73□□□□□ -0.53
USP53-207ENST00000510852 DIS3Q9Y2L1 958 aaKnown RBP11.73□□□□□ -0.53
USP53-207ENST00000510852 ZNF521Q96K83 1311 aa11.73□□□□□ -0.53
USP53-207ENST00000510852 BICDL2A1A5D9 508 aa11.72□□□□□ -0.53
USP53-207ENST00000510852 LDHCP07864 332 aa11.72□□□□□ -0.53
USP53-207ENST00000510852 USP5P45974 858 aa11.72□□□□□ -0.53
USP53-207ENST00000510852 UNC5CLQ8IV45 518 aa11.72□□□□□ -0.53
USP53-207ENST00000510852 GAS2L2Q8NHY3 880 aa11.72□□□□□ -0.53
USP53-207ENST00000510852 HSP90AA1P07900 732 aaKnown RBP11.72□□□□□ -0.53
USP53-207ENST00000510852 TATP17735 454 aaPredicted RBP11.72□□□□□ -0.53
USP53-207ENST00000510852 ZSWIM4Q9H7M6 989 aa11.72□□□□□ -0.53
USP53-207ENST00000510852 PRKAG2Q9UGJ0 569 aa11.72□□□□□ -0.53
USP53-207ENST00000510852 MEGF6O75095 1541 aa11.71□□□□□ -0.53
USP53-207ENST00000510852 PLEKHO1Q53GL0 409 aaPredicted RBP11.71□□□□□ -0.53
USP53-207ENST00000510852 CC2D1AQ6P1N0 951 aaPredicted RBP11.71□□□□□ -0.53
USP53-207ENST00000510852 BORCS6Q96GS4 357 aa11.71□□□□□ -0.53
USP53-207ENST00000510852 BCL9LQ86UU0 1499 aa11.71□□□□□ -0.53
USP53-207ENST00000510852 UBE4AQ14139 1066 aa11.71□□□□□ -0.54
USP53-207ENST00000510852 AMOTQ4VCS5 1084 aa11.71□□□□□ -0.54
USP53-207ENST00000510852 C1QTNF12Q5T7M4 302 aa11.71□□□□□ -0.54
USP53-207ENST00000510852 FILIP1Q7Z7B0 1213 aa11.71□□□□□ -0.54
USP53-207ENST00000510852 OXER1Q8TDS5 423 aa11.71□□□□□ -0.54
USP53-207ENST00000510852 ISY1Q9ULR0 285 aaKnown RBP11.71□□□□□ -0.54
USP53-207ENST00000510852 MRVI1Q9Y6F6 885 aa11.71□□□□□ -0.54
USP53-207ENST00000510852 NRAPQ86VF7 1730 aa11.71□□□□□ -0.54
USP53-207ENST00000510852 TIMM44O43615 452 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 USP21Q9UK80 565 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 NWD2Q9ULI1 1742 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.7□□□□□ -0.54
USP53-207ENST00000510852 IL2RBP14784 551 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 PDE3BQ13370 1112 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 KCTD2Q14681 263 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 ENOX2Q16206 610 aaKnown RBP11.7□□□□□ -0.54
USP53-207ENST00000510852 HDGFL1Q5TGJ6 251 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 CDCA7LQ96GN5 454 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 NAP1L4Q99733 375 aaKnown RBP11.7□□□□□ -0.54
USP53-207ENST00000510852 IFT122Q9HBG6 1241 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 ABCF2Q9UG63 623 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 SPATA31A1Q5TZJ5 1347 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 SYNRGQ9UMZ2 1314 aa11.7□□□□□ -0.54
USP53-207ENST00000510852 ANKRD33BA6NCL7 494 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 GPR37O15354 613 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 LDHAP00338 332 aaKnown RBP11.69□□□□□ -0.54
USP53-207ENST00000510852 GOLGA2Q08379 1002 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 WDR63Q8IWG1 891 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 DRC7Q8IY82 874 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 MPHOSPH6Q99547 160 aaKnown RBP11.69□□□□□ -0.54
USP53-207ENST00000510852 SPATA31A5Q5VU36 1347 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 SPATA31A7Q8IWB4 1347 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms