RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 PAPPAQ13219 1627 aa10.97□□□□□ -0.65
PDGFRA-208ENST00000509490 AP5Z1O43299 807 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 FIBPO43427 364 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 MAP3K11Q16584 847 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 LARP1BQ659C4 914 aaKnown RBP10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 MPRIPQ6WCQ1 1025 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 FAM227BQ96M60 508 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 CLSTN2Q9H4D0 955 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 GPR108Q9NPR9 543 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 LAMA4Q16363 1823 aa10.96□□□□□ -0.65
PDGFRA-208ENST00000509490 A0A0D9SFI3 127 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 GCKRQ14397 625 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 SYCP1Q15431 976 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 ANKLE2Q86XL3 938 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 ANKRD24Q8TF21 1146 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 GTF3C6Q969F1 213 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 ZSCAN16Q9H4T2 348 aaPredicted RBP10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 PA2G4Q9UQ80 394 aaKnown RBP10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 MRVI1Q9Y6F6 885 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 U3KPZ7 1027 aaPredicted RBP10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 SH3TC1Q8TE82 1336 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 TJP1Q07157 1748 aa10.96□□□□□ -0.66
PDGFRA-208ENST00000509490 CPA1P15085 419 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 CWF19L2Q2TBE0 894 aaKnown RBP10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 NUP62CLQ9H1M0 184 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 PSME1Q06323 249 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 RESTQ13127 1097 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 GIMAP6Q6P9H5 292 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 SARM1Q6SZW1 724 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 PLA2G4DQ86XP0 818 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 KCNF1Q9H3M0 494 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 ERBB3P21860 1342 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 CDC37L1Q7L3B6 337 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 LEO1Q8WVC0 666 aaPredicted RBP10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 LRRC59Q96AG4 307 aaKnown RBP10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 SLC52A2Q9HAB3 445 aa10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.95□□□□□ -0.66
PDGFRA-208ENST00000509490 SETD1BQ9UPS6 1966 aaKnown RBP10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 CTIFO43310 598 aaKnown RBP10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 HMGB1P09429 215 aaKnown RBP10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 CASP7P55210 303 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 TYRO3Q06418 890 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 NAA16Q6N069 864 aaPredicted RBP10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 ZNF790Q6PG37 636 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 CHMP4CQ96CF2 233 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 HAUS7Q99871 368 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 KCND1Q9NSA2 647 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 ANXA1P04083 346 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 SMAP1Q8IYB5 467 aaPredicted RBP10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 DCCP43146 1447 aa10.94□□□□□ -0.66
PDGFRA-208ENST00000509490 NEXNQ0ZGT2 675 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 TMEM132AQ24JP5 1023 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 ZNF609O15014 1411 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 CTAGE5O15320 804 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 PTPN12Q05209 780 aaKnown RBP10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 TNNI3KQ59H18 835 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 C1orf167Q5SNV9 1468 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 FSD1Q9BTV5 496 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 CCDC94Q9BW85 323 aaPredicted RBP10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 TLR7Q9NYK1 1049 aaKnown RBP10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 FPGT-TNNI3KV9GXZ4 949 aa10.93□□□□□ -0.66
PDGFRA-208ENST00000509490 PFKFB2O60825 505 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 LIG1P18858 919 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 EVCP57679 992 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 NECAB1Q8N987 351 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 TTC12Q9H892 705 aaPredicted RBP10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 SALL1Q9NSC2 1324 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 ZNF589Q86UQ0 364 aaPredicted RBP10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 DSCC1Q9BVC3 393 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 VPS37CA5D8V6 355 aaPredicted RBP10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 ADD1P35611 737 aaKnown RBP10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 ANKRD7Q92527 254 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 NEK1Q96PY6 1258 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 HELLSQ9NRZ9 838 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 DBNLQ9UJU6 430 aaKnown RBP10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 RCOR1Q9UKL0 485 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 CFAP45Q9UL16 551 aa10.92□□□□□ -0.66
PDGFRA-208ENST00000509490 PHKG2P15735 406 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 ESCO1Q5FWF5 840 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 ZNF710Q8N1W2 664 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 SPATA32Q96LK8 384 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 CCDC8Q9H0W5 538 aaPredicted RBP10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 ZNF75DP51815 510 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 EXOSC10Q01780 885 aaKnown RBP10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 FOXD4L6Q3SYB3 417 aaPredicted RBP10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 MCMDC2Q4G0Z9 681 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 EPHA10Q5JZY3 1008 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 FOXD4L3Q6VB84 417 aaPredicted RBP10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 PGBD1Q96JS3 809 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 CBX8Q9HC52 389 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 ATG3Q9NT62 314 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 MEGF6O75095 1541 aa10.91□□□□□ -0.66
PDGFRA-208ENST00000509490 PRAMEF22A3QJZ6 481 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 NEMFO60524 1076 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 KCNJ4P48050 445 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 KBTBD3Q8NAB2 608 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 TNMDQ9H2S6 317 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 BOLA2Q9H3K6 86 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 FAM13BQ9NYF5 915 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms