RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 CCDC152Q4G0S7 254 aa14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 ATF7IPQ6VMQ6 1270 aa14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 FTSJ3Q8IY81 847 aaKnown RBP14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 CHMP3Q9Y3E7 222 aa14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 LAMB2P55268 1798 aa14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 PPEF1O14829 653 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 CTSWP56202 376 aa14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 CRAMP1Q96RY5 1269 aa14.41□□□□□ -0.1
LIMCH1-210ENST00000509454 ABCC4O15439 1325 aa14.4□□□□□ -0.1
LIMCH1-210ENST00000509454 SLX4Q8IY92 1834 aa14.4□□□□□ -0.1
LIMCH1-210ENST00000509454 TRIM27P14373 513 aa14.4□□□□□ -0.1
LIMCH1-210ENST00000509454 HOXA10P31260 410 aaPredicted RBP14.4□□□□□ -0.1
LIMCH1-210ENST00000509454 SF3B3Q15393 1217 aaKnown RBP14.4□□□□□ -0.1
LIMCH1-210ENST00000509454 TNNQ9UQP3 1299 aa14.4□□□□□ -0.1
LIMCH1-210ENST00000509454 ARFGEF1Q9Y6D6 1849 aa14.39□□□□□ -0.11
LIMCH1-210ENST00000509454 GRAPQ13588 217 aa14.39□□□□□ -0.11
LIMCH1-210ENST00000509454 SOGA3Q5TF21 947 aa14.39□□□□□ -0.11
LIMCH1-210ENST00000509454 GRAPLQ8TC17 118 aaPredicted RBP14.39□□□□□ -0.11
LIMCH1-210ENST00000509454 NBPF7P0C2Y1 421 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-210ENST00000509454 CASP7P55210 303 aa14.38□□□□□ -0.11
LIMCH1-210ENST00000509454 CCDC93Q567U6 631 aa14.37□□□□□ -0.11
LIMCH1-210ENST00000509454 OLFM4Q6UX06 510 aa14.37□□□□□ -0.11
LIMCH1-210ENST00000509454 DZIP1LQ8IYY4 767 aaKnown RBP14.37□□□□□ -0.11
LIMCH1-210ENST00000509454 SEC31BQ9NQW1 1179 aa14.37□□□□□ -0.11
LIMCH1-210ENST00000509454 MYH3P11055 1940 aa14.37□□□□□ -0.11
LIMCH1-210ENST00000509454 BBOX1O75936 387 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 UBTFL1P0CB47 393 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 RASSF7Q02833 373 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 ITPRIPQ8IWB1 547 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 TTLL11Q8NHH1 800 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 CELF1Q92879 486 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 SUCLG2Q96I99 432 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 PLA2G12BQ9BX93 195 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 GREM2Q9H772 168 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 TAF1P21675 1872 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 PLIN1O60240 522 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 FAM161AQ3B820 660 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 INTS3Q68E01 1043 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 LMBR1LQ6UX01 489 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 ANKRD18AQ8IVF6 992 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 TMEM57Q8N5G2 664 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 CDC5LQ99459 802 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 USP44Q9H0E7 712 aa14.36□□□□□ -0.11
LIMCH1-210ENST00000509454 MS4A1P11836 297 aa14.35□□□□□ -0.11
LIMCH1-210ENST00000509454 RPS8P62241 208 aaKnown RBP14.35□□□□□ -0.11
LIMCH1-210ENST00000509454 TAF7LQ5H9L4 462 aa14.35□□□□□ -0.11
LIMCH1-210ENST00000509454 RTKN2Q8IZC4 609 aa14.35□□□□□ -0.11
LIMCH1-210ENST00000509454 TAOK3Q9H2K8 898 aa14.35□□□□□ -0.11
LIMCH1-210ENST00000509454 ATP6V0A2Q9Y487 856 aa14.35□□□□□ -0.11
LIMCH1-210ENST00000509454 ANKRD18BA2A2Z9 1011 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 ITGA6P23229 1130 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 IGHMBP2P38935 993 aaKnown RBP14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 FOXO4P98177 505 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 IFIT5Q13325 482 aaKnown RBP14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 EPHA10Q5JZY3 1008 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 CC2D2BQ6DHV5 1058 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 TMC4Q7Z404 712 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 SLC51AQ86UW1 340 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 PANK1Q8TE04 598 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 HDAC5Q9UQL6 1122 aa14.34□□□□□ -0.11
LIMCH1-210ENST00000509454 GNAI3P08754 354 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 YY1P25490 414 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 CCDC57Q2TAC2 916 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 SP8Q8IXZ3 490 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 C7orf43Q8WVR3 580 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 MEIS3Q99687 375 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 BICC1Q9H694 974 aaKnown RBP14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 RNF181Q9P0P0 153 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 UTYO14607 1347 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 CHD4Q14839 1912 aa14.33□□□□□ -0.12
LIMCH1-210ENST00000509454 NFKBIEO00221 500 aa14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 CSF1RP07333 972 aa14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 RLBP1P12271 317 aa14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 C9orf131Q5VYM1 1079 aa14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 DPP8Q6V1X1 898 aaPredicted RBP14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 MPNDQ8N594 471 aa14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 MPHOSPH8Q99549 860 aa14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 LRRFIP2Q9Y608 721 aaKnown RBP14.32□□□□□ -0.12
LIMCH1-210ENST00000509454 FKBP4Q02790 459 aaKnown RBP eCLIP14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 ZNF277Q9NRM2 450 aaPredicted RBP14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 ANKIB1Q9P2G1 1089 aa14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 NSFL1CQ9UNZ2 370 aaKnown RBP14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 RTL9Q8NET4 1388 aa14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 SPEF2Q9C093 1822 aa14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 LMNB1P20700 586 aa14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 GRIPAP1Q4V328 841 aa14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 KAZALD1Q96I82 304 aa14.31□□□□□ -0.12
LIMCH1-210ENST00000509454 COL4A1P02462 1669 aa14.3□□□□□ -0.12
LIMCH1-210ENST00000509454 FER1L6Q2WGJ9 1857 aa14.3□□□□□ -0.12
LIMCH1-210ENST00000509454 C6orf229H3BNL8 230 aa14.3□□□□□ -0.12
LIMCH1-210ENST00000509454 GPSM2P81274 684 aa14.3□□□□□ -0.12
LIMCH1-210ENST00000509454 ANKRD44Q8N8A2 993 aa14.3□□□□□ -0.12
LIMCH1-210ENST00000509454 ZNF594Q96JF6 807 aaPredicted RBP14.3□□□□□ -0.12
LIMCH1-210ENST00000509454 GNAI2P04899 355 aa14.29□□□□□ -0.12
LIMCH1-210ENST00000509454 SUPT20HQ8NEM7 779 aa14.29□□□□□ -0.12
LIMCH1-210ENST00000509454 CNNM1Q9NRU3 951 aa14.29□□□□□ -0.12
LIMCH1-210ENST00000509454 BSDC1Q9NW68 430 aaPredicted RBP14.29□□□□□ -0.12
LIMCH1-210ENST00000509454 COG6Q9Y2V7 657 aa14.29□□□□□ -0.12
LIMCH1-210ENST00000509454 CCDC88AQ3V6T2 1871 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms