RNA–Protein interactions for RNA: ENST00000503923.1

VCAN-205, Transcript of versican, humanhuman

TSL 4

Gene VCAN, Length 498 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-205ENST00000503923 DDX46Q7L014 1031 aaKnown RBP14.03□□□□□ -0.16
VCAN-205ENST00000503923 DZIP1LQ8IYY4 767 aaKnown RBP14.03□□□□□ -0.16
VCAN-205ENST00000503923 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.03□□□□□ -0.16
VCAN-205ENST00000503923 TNNQ9UQP3 1299 aa14.03□□□□□ -0.16
VCAN-205ENST00000503923 CACNA1SQ13698 1873 aa14.02□□□□□ -0.16
VCAN-205ENST00000503923 NBPF7P0C2Y1 421 aaPredicted RBP14.02□□□□□ -0.17
VCAN-205ENST00000503923 USP44Q9H0E7 712 aa14.02□□□□□ -0.17
VCAN-205ENST00000503923 SLX4Q8IY92 1834 aa14.01□□□□□ -0.17
VCAN-205ENST00000503923 GOLGB1Q14789 3259 aaKnown RBP14.01□□□□□ -0.17
VCAN-205ENST00000503923 GRAPQ13588 217 aa14.01□□□□□ -0.17
VCAN-205ENST00000503923 TMEM57Q8N5G2 664 aa14.01□□□□□ -0.17
VCAN-205ENST00000503923 TTLL11Q8NHH1 800 aa14.01□□□□□ -0.17
VCAN-205ENST00000503923 GRAPLQ8TC17 118 aaPredicted RBP14.01□□□□□ -0.17
VCAN-205ENST00000503923 HDAC5Q9UQL6 1122 aa14.01□□□□□ -0.17
VCAN-205ENST00000503923 BBOX1O75936 387 aa14□□□□□ -0.17
VCAN-205ENST00000503923 CSF1RP07333 972 aa14□□□□□ -0.17
VCAN-205ENST00000503923 FOXO4P98177 505 aa14□□□□□ -0.17
VCAN-205ENST00000503923 SOGA3Q5TF21 947 aa14□□□□□ -0.17
VCAN-205ENST00000503923 SUCLG2Q96I99 432 aa14□□□□□ -0.17
VCAN-205ENST00000503923 CCDC85AQ96PX6 553 aaPredicted RBP14□□□□□ -0.17
VCAN-205ENST00000503923 RTL9Q8NET4 1388 aa13.99□□□□□ -0.17
VCAN-205ENST00000503923 PPEF1O14829 653 aaPredicted RBP13.99□□□□□ -0.17
VCAN-205ENST00000503923 C21orf2O43822 256 aa13.99□□□□□ -0.17
VCAN-205ENST00000503923 PLIN1O60240 522 aa13.99□□□□□ -0.17
VCAN-205ENST00000503923 GNAI3P08754 354 aa13.99□□□□□ -0.17
VCAN-205ENST00000503923 UBTFL1P0CB47 393 aaPredicted RBP13.99□□□□□ -0.17
VCAN-205ENST00000503923 RLBP1P12271 317 aa13.99□□□□□ -0.17
VCAN-205ENST00000503923 TMC4Q7Z404 712 aa13.99□□□□□ -0.17
VCAN-205ENST00000503923 GREM2Q9H772 168 aa13.99□□□□□ -0.17
VCAN-205ENST00000503923 ZNF219Q9P2Y4 722 aaPredicted RBP13.99□□□□□ -0.17
VCAN-205ENST00000503923 TAF1P21675 1872 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 EPHA10Q5JZY3 1008 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 CC2D2BQ6DHV5 1058 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 ITPRIPQ8IWB1 547 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 PANK1Q8TE04 598 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 C7orf43Q8WVR3 580 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 CELF1Q92879 486 aaKnown RBP13.98□□□□□ -0.17
VCAN-205ENST00000503923 KAZALD1Q96I82 304 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 CDC5LQ99459 802 aaKnown RBP13.98□□□□□ -0.17
VCAN-205ENST00000503923 MEIS3Q99687 375 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 TMX4Q9H1E5 349 aaPredicted RBP13.98□□□□□ -0.17
VCAN-205ENST00000503923 SEC31BQ9NQW1 1179 aa13.98□□□□□ -0.17
VCAN-205ENST00000503923 ITGA6P23229 1130 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 RPS8P62241 208 aaKnown RBP13.97□□□□□ -0.17
VCAN-205ENST00000503923 PDE3AQ14432 1141 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 FAM161AQ3B820 660 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 GRIPAP1Q4V328 841 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 CCDC93Q567U6 631 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 LMBR1LQ6UX01 489 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 ARHGAP27Q6ZUM4 889 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 BICC1Q9H694 974 aaKnown RBP13.97□□□□□ -0.17
VCAN-205ENST00000503923 CHMP3Q9Y3E7 222 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 ATP6V0A2Q9Y487 856 aa13.97□□□□□ -0.17
VCAN-205ENST00000503923 ANKRD18BA2A2Z9 1011 aa13.96□□□□□ -0.17
VCAN-205ENST00000503923 IFIT5Q13325 482 aaKnown RBP13.96□□□□□ -0.17
VCAN-205ENST00000503923 CCDC57Q2TAC2 916 aa13.96□□□□□ -0.17
VCAN-205ENST00000503923 RABL6Q3YEC7 729 aaPredicted RBP13.96□□□□□ -0.17
VCAN-205ENST00000503923 ANKRD18AQ8IVF6 992 aa13.96□□□□□ -0.17
VCAN-205ENST00000503923 SP8Q8IXZ3 490 aa13.96□□□□□ -0.17
VCAN-205ENST00000503923 RTKN2Q8IZC4 609 aa13.96□□□□□ -0.17
VCAN-205ENST00000503923 IGHMBP2P38935 993 aaKnown RBP13.95□□□□□ -0.18
VCAN-205ENST00000503923 RRP1P56182 461 aaKnown RBP13.95□□□□□ -0.18
VCAN-205ENST00000503923 MVPQ14764 893 aaKnown RBP13.95□□□□□ -0.18
VCAN-205ENST00000503923 ANKRD44Q8N8A2 993 aa13.95□□□□□ -0.18
VCAN-205ENST00000503923 LRRFIP2Q9Y608 721 aaKnown RBP13.95□□□□□ -0.18
VCAN-205ENST00000503923 FER1L6Q2WGJ9 1857 aa13.95□□□□□ -0.18
VCAN-205ENST00000503923 COL4A1P02462 1669 aa13.95□□□□□ -0.18
VCAN-205ENST00000503923 UTRNP46939 3433 aa13.94□□□□□ -0.18
VCAN-205ENST00000503923 ZBTB7BO15156 539 aaPredicted RBP13.94□□□□□ -0.18
VCAN-205ENST00000503923 GNAI2P04899 355 aa13.94□□□□□ -0.18
VCAN-205ENST00000503923 OLFM4Q6UX06 510 aa13.94□□□□□ -0.18
VCAN-205ENST00000503923 DDX19BQ9UMR2 479 aa13.94□□□□□ -0.18
VCAN-205ENST00000503923 COG6Q9Y2V7 657 aa13.94□□□□□ -0.18
VCAN-205ENST00000503923 LTBP3Q9NS15 1303 aa13.93□□□□□ -0.18
VCAN-205ENST00000503923 LRRC37AA6NMS7 1700 aa13.93□□□□□ -0.18
VCAN-205ENST00000503923 NFKBIEO00221 500 aa13.93□□□□□ -0.18
VCAN-205ENST00000503923 TAF7LQ5H9L4 462 aa13.93□□□□□ -0.18
VCAN-205ENST00000503923 C20orf194Q5TEA3 1177 aa13.93□□□□□ -0.18
VCAN-205ENST00000503923 MPHOSPH8Q99549 860 aa13.93□□□□□ -0.18
VCAN-205ENST00000503923 TAOK3Q9H2K8 898 aa13.93□□□□□ -0.18
VCAN-205ENST00000503923 CHMP4BQ9H444 224 aaKnown RBP13.93□□□□□ -0.18
VCAN-205ENST00000503923 BSDC1Q9NW68 430 aaPredicted RBP13.93□□□□□ -0.18
VCAN-205ENST00000503923 CHD4Q14839 1912 aa13.92□□□□□ -0.18
VCAN-205ENST00000503923 SNED1Q8TER0 1413 aa13.92□□□□□ -0.18
VCAN-205ENST00000503923 FKBP4Q02790 459 aaKnown RBP eCLIP13.92□□□□□ -0.18
VCAN-205ENST00000503923 RASSF7Q02833 373 aa13.92□□□□□ -0.18
VCAN-205ENST00000503923 MPNDQ8N594 471 aa13.92□□□□□ -0.18
VCAN-205ENST00000503923 PSMD1Q99460 953 aa13.92□□□□□ -0.18
VCAN-205ENST00000503923 SPEF2Q9C093 1822 aa13.92□□□□□ -0.18
VCAN-205ENST00000503923 DPP8Q6V1X1 898 aaPredicted RBP13.91□□□□□ -0.18
VCAN-205ENST00000503923 SLC51AQ86UW1 340 aa13.91□□□□□ -0.18
VCAN-205ENST00000503923 LMNB1P20700 586 aa13.9□□□□□ -0.18
VCAN-205ENST00000503923 GPSM2P81274 684 aa13.9□□□□□ -0.18
VCAN-205ENST00000503923 MTX1Q13505 466 aa13.9□□□□□ -0.18
VCAN-205ENST00000503923 LDHAL6AQ6ZMR3 332 aa13.9□□□□□ -0.18
VCAN-205ENST00000503923 SUPT20HQ8NEM7 779 aa13.9□□□□□ -0.18
VCAN-205ENST00000503923 ZNF594Q96JF6 807 aaPredicted RBP13.9□□□□□ -0.18
VCAN-205ENST00000503923 NSFL1CQ9UNZ2 370 aaKnown RBP13.9□□□□□ -0.18
VCAN-205ENST00000503923 SBF1O95248 1867 aa13.9□□□□□ -0.18
VCAN-205ENST00000503923 RFX5P48382 616 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms